View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_high_72 (Length: 240)
Name: NF20578_high_72
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_high_72 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10421114 - 10420882
Alignment:
| Q |
1 |
agtcttcaactccaatggtcccaacatcataatgacataccggaacttata------------aagtttcaattcaaaagttaaagttattatgcagatt |
88 |
Q |
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| T |
10421114 |
agtcttcaactccaatggtcccaacatcataatgacataccggaacttatacatttgtaatgaaagtttcaattcaaaagttaaagttattatgcagatt |
10421015 |
T |
|
| Q |
89 |
tttctagatgtctcagttcaaccacttgaactacaccatgagaactaacgtaacctttttgggtacatataatatatacatttgtagcatttccagctag |
188 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10421014 |
tttctagatgtctcagttcaaccacttgaactacgccatgagaactaacgtaaccttttttggtacatataatatatacatttgtagcatttccagctag |
10420915 |
T |
|
| Q |
189 |
gtgttcgtgtgggttttacattttccaaaccta |
221 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
10420914 |
gtgttcgtgtgggttttacattttccaaaccta |
10420882 |
T |
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