View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_high_8 (Length: 645)
Name: NF20578_high_8
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 106 - 621
Target Start/End: Original strand, 31101427 - 31101939
Alignment:
| Q |
106 |
tttggagttgtcatcaatttcggaatttgcatagttaccaaactaaaagtgaatttgaagcgattaagaacacacagataagggacaaagtttattcctc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101427 |
tttggagttgtcatcaatttcggaatttgcatagttaccaaactaaaagtgaatttgaagcgattaagaacacacagataagggacaaagtttattcctc |
31101526 |
T |
|
| Q |
206 |
aacgttaattgcttgaagaaagggaaacaaggttgaggactataacctgatacctaagctaaatttctatttcgattacaataatatataagcttatttg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101527 |
aacgttaattgcttgaagaaagggaaacaaggttgaggactataacctgatacctaagctaaatttctatttcgattacaataatatataagcttatttg |
31101626 |
T |
|
| Q |
306 |
agaaatcacactagctactttgggagctgttaatgcagtggtagaaaacttgaatgcaagctgatactcgtaacacacatgaattgatttatatacttca |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101627 |
agaaatcacactagctactttgggagctgttaatgcagtggtagaaaacttgactgtaagctgatactcgtaacacacatgaattgatttatatacttca |
31101726 |
T |
|
| Q |
406 |
gcattgtctacacactctacaatccacagttgttgctattagtatcataacgtgattaggtcgacagaaggctaaatataagtaacatgttattcaccca |
505 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31101727 |
gcattgtctatacactctacaatccacagttgttgctat---tatcataacgtgattaggtcgacagaaggctaaatataagtaacatgttattcaccta |
31101823 |
T |
|
| Q |
506 |
tcatatccttccttattttttctaaaactaatcaaaatcctgaagtaagcttttacagaaagaaatcctaaactaatcaaaatatataagcgatgaggtt |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101824 |
tcatatccttccttattttttctaaaactaatcaaaatcctgaagtaagcttttacagaaagaaatcctaaactaatcaaaatatataagcgatgaggtt |
31101923 |
T |
|
| Q |
606 |
gacaaccttaaagtaa |
621 |
Q |
| |
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|||||||||||||||| |
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| T |
31101924 |
gacaaccttaaagtaa |
31101939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 204 - 373
Target Start/End: Original strand, 38897874 - 38898041
Alignment:
| Q |
204 |
tcaacgttaattgcttgaagaaagggaaacaaggttgaggactataacctgatacctaagctaaatttctatttcgattacaataatatataagcttatt |
303 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
38897874 |
tcaatgttaattgcttgaagaaagggaaaca--gttgaggactataagctgatacctaagctaaatttctatttcaattacaatggtatataagcttatt |
38897971 |
T |
|
| Q |
304 |
tgagaaatcacactagctactttgggagctgttaatgcagtggtagaaaacttgaatgcaagctgatact |
373 |
Q |
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| T |
38897972 |
tgagaaatcatactagctattttgggagctgttaatgaagtggtagaaaacttgaatgtaagctgatact |
38898041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 31101110 - 31101000
Alignment:
| Q |
1 |
tcgaatcttagtctgtgatatcagtgagacagtgatggagtctttgaagtggtgacacctaattctactaatagagaatgtttcccggataattctgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
31101110 |
tcgaatcttagtctgtgatatcagtgagacagtgatggagtctttgaagtggcgacacctaattctactattagagaatgtttccaggataattctgttg |
31101011 |
T |
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| Q |
101 |
cggagtttgga |
111 |
Q |
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||||||||||| |
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| T |
31101010 |
cggagtttgga |
31101000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 483 - 630
Target Start/End: Original strand, 38898150 - 38898296
Alignment:
| Q |
483 |
ataagtaacatgttattcacccatcatatccttccttattttttctaaaactaatcaaaatcctgaagtaagcttttacagaaagaaatcctaaactaat |
582 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||| | |||| |||||| || |||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
38898150 |
ataagtaatatgttattcatccatcatatccttcctcacttttcctaaaa-tattcaaaatcctaaactaagcttttacagaaagaaatcctaaactaat |
38898248 |
T |
|
| Q |
583 |
caaaatatataagcgatgaggttgacaaccttaaagtaattgttattg |
630 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||||||||| ||||| |
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| T |
38898249 |
aaaaatatataggtgatgaggttgacagccttaaagtaattggtattg |
38898296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 31101215 - 31101119
Alignment:
| Q |
1 |
tcgaatcttagtctgtgatatcagtgagacagtgatggagtctttgaagtggtgacacctaattctactaatagagaatgtttcccggataattctg |
97 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
31101215 |
tcgaatcttagtctgtgatatcagtgagacagtgatggagtctttgaagtggcgacacctaattctactattagagaatgtttccaggataattctg |
31101119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 398 - 496
Target Start/End: Original strand, 38898037 - 38898135
Alignment:
| Q |
398 |
atacttcagcattgtctacacactctacaatccacagttgttgctattagtatcataacgtgattaggtcgacagaaggctaaatataagtaacatgtt |
496 |
Q |
| |
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|||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
38898037 |
atacttcagcattgtctatatactccacaatcaacagttgttgctattagtatcataacgtgattagatcaacagaaggctaaatataagtaacatgtt |
38898135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 590 - 631
Target Start/End: Original strand, 31102891 - 31102932
Alignment:
| Q |
590 |
tataagcgatgaggttgacaaccttaaagtaattgttattgc |
631 |
Q |
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| T |
31102891 |
tataagtgatgaggttgacaaccttaaagtaattgttattgc |
31102932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 584 - 629
Target Start/End: Original strand, 38898384 - 38898429
Alignment:
| Q |
584 |
aaaatatataagcgatgaggttgacaaccttaaagtaattgttatt |
629 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
38898384 |
aaaatatataagttacgaggttgacaaccttaaagtaattgttatt |
38898429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 31107431 - 31107386
Alignment:
| Q |
370 |
tactcgtaacacacatgaattgatttatatacttcagcattgtcta |
415 |
Q |
| |
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||||| ||||||| |||||||||||||||||| |||||||| |||| |
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|
| T |
31107431 |
tactcataacacatatgaattgatttatatacatcagcattttcta |
31107386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 35426780 - 35426733
Alignment:
| Q |
184 |
taagggacaaagtttattcctcaacgttaattgcttgaagaaagggaa |
231 |
Q |
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||||||||| ||||| | ||||||| |||||||||||||||||||||| |
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| T |
35426780 |
taagggacatagtttctccctcaactttaattgcttgaagaaagggaa |
35426733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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