View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_high_80 (Length: 216)
Name: NF20578_high_80
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_high_80 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 5468183 - 5468004
Alignment:
| Q |
19 |
gatctagcctccaataacttgagcggaacaataccggtttctctattaaatagttggaaggcaatgatgcgtaatgaaggtgttcttggcccagaattcg |
118 |
Q |
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| T |
5468183 |
gatctagcctccaataacttgagcggaacaataccggtttctctattaaatagttggaaggcaacgatgcgtgatgaaggtgttcttggcccagaatttg |
5468084 |
T |
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| Q |
119 |
gccatatgtttttcgatctcgatgataactttcatcctgtgagttttaagagtgtgttaccaactttgggcaaatctgtg |
198 |
Q |
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| T |
5468083 |
gccatatgtttttcgatctcgatgataactttcatcctgtgagttttaagagtgtgttaccaactttgggcaaatctgtg |
5468004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 5393152 - 5393325
Alignment:
| Q |
19 |
gatctagcctccaataacttgagcggaacaataccggtttctctattaaatagttggaaggcaatgatgcgtaatgaaggtgttcttggcccagaattcg |
118 |
Q |
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| T |
5393152 |
gatctagcctccaataacttgaacggaagaataccagtctccctattaaatagttggaaggcaatgatgcgtgatgaagatgttcttgggacagaattag |
5393251 |
T |
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| Q |
119 |
gccatatgtttttcgatctcgatgataactttcatcctgtgagttttaagagtgtgttaccaactttgggcaaa |
192 |
Q |
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| T |
5393252 |
gccatttgttttttgacattgatgataacttccatcctatgagttttaaggctatgttaccagctttggacaaa |
5393325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 5412601 - 5412746
Alignment:
| Q |
19 |
gatctagcctccaataacttgagcggaacaataccggtttctctattaaatagttggaaggcaatgatgcgtaatgaaggtgttcttggcccagaattcg |
118 |
Q |
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| T |
5412601 |
gatctagcctccaataacttcaacggaacaataccagttgccctattaaatagttggaaggcaatgatgcgtgatgaaggcgttcttaggaaagaattag |
5412700 |
T |
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| Q |
119 |
gccatatgtttttcgatctcgatgataactttcatcctgtgagttt |
164 |
Q |
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| T |
5412701 |
gccatttgttttttgacatcgatgataacttccatcctatgagttt |
5412746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 5356608 - 5356704
Alignment:
| Q |
18 |
agatctagcctccaataacttgagcggaacaataccggtttctctattaaatagttggaaggcaatgatgcgtaatgaaggtgttcttggcccagaa |
114 |
Q |
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| T |
5356608 |
agatatagcctccaataatttgagcggcacaatatcaggtacattgttaaaaagttggaaggcaatgatgcgtgatggaggtgtgcttgggccagaa |
5356704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 5354489 - 5354626
Alignment:
| Q |
19 |
gatctagcctccaataacttgagcggaacaataccggtttctctattaaatagttggaaggcaatgatgcgtaatgaaggtgttcttggcccagaattcg |
118 |
Q |
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| T |
5354489 |
gatctagcctccaataacttcggtggaacattatcacctgcactcttaaatagttggaaagcaatgatgcgcgatgaggacgagcttgggccagaattcg |
5354588 |
T |
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| Q |
119 |
gccatatgtttttcgatctcgatgataactttcatcct |
156 |
Q |
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| T |
5354589 |
gccatttgttttttgatattgttgatatctttcatcct |
5354626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 5346527 - 5346460
Alignment:
| Q |
64 |
ttaaatagttggaaggcaatgatgcgtaatgaaggtgttcttggcccagaattcggccatatgttttt |
131 |
Q |
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| T |
5346527 |
ttaaatagttggaaagcaatgatgcgtgacgaagacgtgcttggtccagaattcggcaatttgttttt |
5346460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 5378879 - 5378946
Alignment:
| Q |
64 |
ttaaatagttggaaggcaatgatgcgtaatgaaggtgttcttggcccagaattcggccatatgttttt |
131 |
Q |
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| T |
5378879 |
ttaaatagttggaaagcaatgatgcgtgacgaagacgtgcttgggccagaattcggcaatttgttttt |
5378946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 5502400 - 5502467
Alignment:
| Q |
64 |
ttaaatagttggaaggcaatgatgcgtaatgaaggtgttcttggcccagaattcggccatatgttttt |
131 |
Q |
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| T |
5502400 |
ttaaacagttggaaggcaatgaagcgtgatgaaggcatgcttgggccagaatttggccatttgttttt |
5502467 |
T |
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