View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_10 (Length: 603)
Name: NF20578_low_10
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 14 - 588
Target Start/End: Original strand, 13408252 - 13408833
Alignment:
| Q |
14 |
agaggttcaggtgagttcaccgggtacacggtgaagcgcgaaggcgacgatcacgacggtggtagcaacgacggtggaagttctaatgcatcacagttag |
113 |
Q |
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| T |
13408252 |
agaggttcaggtgagttcaccgggtacacggtgaagcgcgaaggcgacgatcacgaaggtggtagcgacgacggtggaagttctaatgcatcacagttgg |
13408351 |
T |
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| Q |
114 |
atttcaaccaaatgttttcagggtataatggtgatagagagttatcagaaatggtttcagctctaacacatgttgcatcatcagggtcaaatcaaatgag |
213 |
Q |
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| T |
13408352 |
atttcaaccaaatgttttcagggtataatggtgatagagagttatcagaaatggtttcagctctaacacatgttgcatcatcagggtcaaatcaaatgag |
13408451 |
T |
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| Q |
214 |
tagtaatgaatggattcaaaggagtgattttcctttgatatcaagttttggaagtgcttcatcttcttcttcttatgcttcaagttcatggagtggtcaa |
313 |
Q |
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| T |
13408452 |
tagtaatgaatggattcaaaggagtgattttcctttgatatcaagttttggaaatgcttcatcttcttcttcttatgcttcaagttcatggagtggtcaa |
13408551 |
T |
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| Q |
314 |
aaaagagggcgtgatgaagaaagtagtggttctaatcagtatataactcaagctgttgttcctcctagactctttagaactgttatggtaccttctcaag |
413 |
Q |
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| T |
13408552 |
aaaagagggcgtgatgaagaaagtagtggttctaatcagtatataactcaagctgttgttcctcctagactctttagaactgttatggtaccttctcaag |
13408651 |
T |
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| Q |
414 |
aatcatcctcattatcatcaggtgcacttctatatcatactttttctt-actccatcgtctacgcctg------cagtatgttgtcatagttatacaaac |
506 |
Q |
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| T |
13408652 |
aatcatcctcattatcatcaggtgcacttctatatcatactttttcttaactccatcgtctacgcctgcagtatcagtatggtgtcatagttatacaaac |
13408751 |
T |
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| Q |
507 |
ggttggattttatcgcttaaaatctaaccgttataacagctacaacaccatactacagtcgtagatgatttaacttattttt |
588 |
Q |
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| T |
13408752 |
ggttgaattttatcgcttaaaatctaaccgttataacagctacaacaccatactgcagttgtagatgatttaacttattttt |
13408833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 12064746 - 12064784
Alignment:
| Q |
38 |
tacacggtgaagcgcgaaggcgacgatcacgacggtggt |
76 |
Q |
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| T |
12064746 |
tacacggtgaagtgcgaaggcgacgatcacgacagtggt |
12064784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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