View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_15 (Length: 534)
Name: NF20578_low_15
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_15 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 42559297 - 42559581
Alignment:
| Q |
16 |
atgaatagatcagaggaaatagaaagattaacaaataaaattcacaaaccattgttgttgaagctctccaaggttttgctgtcttcttcgctcgttcgcg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42559297 |
atgaatagatcagaggaaatagaaagattaacaaataaaattaactaaccattgttgttgaagctctccaaggttttgctgtcttcttcgctcgttcgcg |
42559396 |
T |
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| Q |
116 |
gcagctagggttatgaagattcggtaacaacgaaatctgcttatgtttcttatatatggttggatcaaaactcaaaagcccaagcccataaaccttttca |
215 |
Q |
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| T |
42559397 |
gcagctagggttatgaagattcagtaacaacgaaatctgcttctgtttattatatatggttgggtcaaaactcaaaagcccaagcccataaaccttttca |
42559496 |
T |
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| Q |
216 |
cnnnnnnnnnnnnnnnnnnnaaatctgaccaaaataagtctaaaataatttattttagattatacgatggtggtatataattttcatatgaat |
308 |
Q |
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| T |
42559497 |
c--------tttttttttttaaatctgaccaaaataagtctaaaataatttattttagattatacgatggtggtatataattttcatctgaat |
42559581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 475
Target Start/End: Original strand, 42559760 - 42559812
Alignment:
| Q |
423 |
atatatgtttggttctcatgatttcgatgatatatctaattgttttgaacaaa |
475 |
Q |
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| T |
42559760 |
atatatgttccgttctcatgatttcgatgatatatctaattgttttgaacaaa |
42559812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 499 - 534
Target Start/End: Original strand, 42559833 - 42559868
Alignment:
| Q |
499 |
atagatgatttggcaaaaccattataaactcacaca |
534 |
Q |
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| T |
42559833 |
atagatgatttggcaaaaccattataaactcacaca |
42559868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Original strand, 42559667 - 42559701
Alignment:
| Q |
391 |
gtatagttcactaaaataatatctagtgcttaata |
425 |
Q |
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| T |
42559667 |
gtatagttcactaaaagaatatctagtgcttaata |
42559701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 32738307 - 32738343
Alignment:
| Q |
498 |
gatagatgatttggcaaaaccattataaactcacaca |
534 |
Q |
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| T |
32738307 |
gatagatgaaatggcaaaaccattataaactcacaca |
32738343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 34010219 - 34010183
Alignment:
| Q |
498 |
gatagatgatttggcaaaaccattataaactcacaca |
534 |
Q |
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| T |
34010219 |
gatagatgaaatggcaaaaccattataaactcacaca |
34010183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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