View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_16 (Length: 491)

Name: NF20578_low_16
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_16
NF20578_low_16
[»] chr8 (14 HSPs)
chr8 (16-471)||(39785563-39786020)
chr8 (3-237)||(39791392-39791628)
chr8 (4-249)||(39795806-39796053)
chr8 (16-225)||(39777329-39777540)
chr8 (276-446)||(6863034-6863205)
chr8 (316-446)||(34018199-34018329)
chr8 (301-444)||(4472242-4472384)
chr8 (345-443)||(5654688-5654786)
chr8 (279-444)||(34856393-34856551)
chr8 (277-409)||(41957463-41957597)
chr8 (365-439)||(38825797-38825871)
chr8 (308-410)||(11109571-11109673)
chr8 (308-410)||(11595554-11595658)
chr8 (367-432)||(33474227-33474292)
[»] chr5 (5 HSPs)
chr5 (278-446)||(33155525-33155693)
chr5 (276-446)||(3769800-3769965)
chr5 (301-424)||(2818964-2819087)
chr5 (378-441)||(19386806-19386869)
chr5 (384-439)||(25928067-25928122)
[»] chr3 (11 HSPs)
chr3 (276-446)||(40386291-40386460)
chr3 (277-446)||(49596626-49596796)
chr3 (277-440)||(42347312-42347474)
chr3 (277-420)||(20753206-20753349)
chr3 (281-446)||(35052468-35052626)
chr3 (335-448)||(2585899-2586012)
chr3 (365-446)||(49995011-49995092)
chr3 (370-436)||(48184550-48184616)
chr3 (371-429)||(4221643-4221701)
chr3 (321-378)||(7882811-7882868)
chr3 (366-406)||(17105986-17106026)
[»] chr7 (8 HSPs)
chr7 (281-441)||(46981316-46981474)
chr7 (347-448)||(23940529-23940630)
chr7 (281-446)||(6856902-6857071)
chr7 (385-446)||(39611732-39611793)
chr7 (350-445)||(37105485-37105580)
chr7 (338-391)||(11457626-11457679)
chr7 (367-443)||(5989672-5989748)
chr7 (288-446)||(26853088-26853246)
[»] chr4 (10 HSPs)
chr4 (301-438)||(34113633-34113770)
chr4 (295-417)||(8482358-8482480)
chr4 (276-348)||(43405221-43405293)
chr4 (301-446)||(43613635-43613779)
chr4 (352-446)||(6365186-6365280)
chr4 (338-448)||(15835339-15835449)
chr4 (354-438)||(26688736-26688819)
chr4 (390-446)||(56127371-56127427)
chr4 (347-434)||(36158935-36159023)
chr4 (374-446)||(51079059-51079131)
[»] chr6 (4 HSPs)
chr6 (281-437)||(2188700-2188856)
chr6 (316-443)||(2572263-2572391)
chr6 (365-429)||(13587603-13587667)
chr6 (326-444)||(957180-957297)
[»] chr1 (9 HSPs)
chr1 (340-448)||(39742516-39742624)
chr1 (358-448)||(46014498-46014588)
chr1 (352-436)||(7890383-7890467)
chr1 (384-447)||(8041396-8041459)
chr1 (338-444)||(27925348-27925454)
chr1 (372-432)||(6586876-6586936)
chr1 (368-436)||(7890265-7890333)
chr1 (357-416)||(49920309-49920368)
chr1 (387-423)||(7817340-7817376)
[»] chr2 (4 HSPs)
chr2 (369-443)||(37609341-37609415)
chr2 (294-446)||(4522266-4522418)
chr2 (363-446)||(38318054-38318137)
chr2 (339-429)||(17104575-17104665)


Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Complemental strand, 39786020 - 39785563
Alignment:
Q  16 acatatgaaaagcaattccgtttcactttcttatggaaggtacagctgtatgagtcac--gataaatatgcatttgcattgtctgcaagtggtaaggact 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  39786020 acatatgaaaagcagttccgtttcactttcttatggaaggtacagctgtatgagtcacaagataaatatgcatttgcattgtctgcaagtggtaaggact 39785921  T
Q  114 tgggtagggaagctagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtctattacctacatc 213  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39785920 tgggtaaggaagctagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtctattacctacatc 39785821  T
Q  214 tacctgccatcaagaaaataaggagccaatgcaattgcagaaaatattagaggaactcaaagtaggctttgtccaacatacacaaggaaaatggtcttgc 313  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39785820 tacctgccatcaagaaaataaggacccaatgcaattgtagaaaatattagaggaactcaaagtaggctttgtccaacatacacaaggaaaatggtcttgc 39785721  T
Q  314 atcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagct 413  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39785720 atcatgcacaagtgtcctttgcgccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagct 39785621  T
Q  414 tatgcatgatgcaagacttgtctcacttgtgcatcttccaagcctcacagtgtaccag 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39785620 tatgcatgatgcaagacttgtctcacttgtgcatcttccaagcctcacagtgtaccag 39785563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 39791628 - 39791392
Alignment:
Q  3 aggagcagcacagacatatgaaaagcaattccgtttcactttcttatggaaggtacagctgtatgagtcac--gataaatatgcatttgcattgtctgca 100  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||||||||| |||||||||| |||| ||  |||||||| | |||| ||||||| ||     
T  39791628 aggagcagtacagatatatgaaaagcagttccatttcactttcttatggaagttacagctgtacgagttacaagataaataagtattttcattgtccgcg 39791529  T
Q  101 agtggtaaggacttgggtagggaagctagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39791528 agtggtaaggacttgggtagggaagccagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtc 39791429  T
Q  201 tattacctacatctacctgccatcaagaaaataagga 237  Q
    | |||||||||||||||| |||| ||||||| |||||    
T  39791428 ttttacctacatctacctaccattaagaaaaaaagga 39791392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 39796053 - 39795806
Alignment:
Q  4 ggagcagcacagacatatgaaaagcaattccgtttcactttcttatggaaggtacagctgtatgagtcacgata--aatatgcatttgcattgtctgcaa 101  Q
    ||||||| ||| |||||||||||||| |||| ||||| |||||| ||| |  | ||||| || ||||||| | |  |||| |||  |||||||||||| |    
T  39796053 ggagcagtacaaacatatgaaaagcagttccatttcagtttcttgtggtacttgcagctatacgagtcacaagacgaataagcaggtgcattgtctgcta 39795954  T
Q  102 gtggtaaggacttgggtagggaagctagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtct 201  Q
    ||||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||    
T  39795953 gtggtaaggacttgggtagagaaaccagatgctgcagattaatggccaaccggttgcttcttttcccttccaattgtaatctaaggccagttactggcct 39795854  T
Q  202 attacctacatctacctgccatcaagaaaataaggagccaatgcaatt 249  Q
    | | |||||||||||||| ||||||||||| ||| ||| |||||||||    
T  39795853 aatgcctacatctacctgtcatcaagaaaaaaagaagctaatgcaatt 39795806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 39777540 - 39777329
Alignment:
Q  16 acatatgaaaagcaattccgtttcactttcttatggaaggtacagctgtatgagtcac--gataaatatgcatttgcattgtctgcaagtggtaaggact 113  Q
    ||||||||||||||  ||| ||||||||||||||||||  | ||||| || |||||||  || ||||| |||||||| |||||||| |||||||||||||    
T  39777540 acatatgaaaagcagctccatttcactttcttatggaaattgcagctataggagtcacaagacaaataggcatttgcgttgtctgcgagtggtaaggact 39777441  T
Q  114 tgggtagggaagctagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtctattacctacatc 213  Q
    | ||||  ||||  |||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  39777440 ttggtaaagaagtcagatgctgaaggtgaatggccaaccggttgcttcttctcccttccaattgtaatctcaggccaattactggtctattaccaacatc 39777341  T
Q  214 tacctgccatca 225  Q
    ||||| ||||||    
T  39777340 taccttccatca 39777329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 276 - 446
Target Start/End: Complemental strand, 6863205 - 6863034
Alignment:
Q  276 taggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaa-gtcatatcatttctcatttaatt 374  Q
    ||||||||||| ||||| |||||| |||||||||||||| |||||||||||| | ||| ||||||||| | ||||| |||| ||||| | ||||||||||    
T  6863205 taggctttgtctaacatgcacaagcaaaatggtcttgcaccatgcacaagtgccttttccaccattagataaaaaaagtcacatcatatttcatttaatt 6863106  T
Q  375 taattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    |||| ||| |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| ||||    
T  6863105 taatggtgagatttattgatccaatggtggaaactagcttgtgtatgatgcaagacttgtctcacttatgca 6863034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 316 - 446
Target Start/End: Original strand, 34018199 - 34018329
Alignment:
Q  316 catgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagctta 415  Q
    |||||||||||  | ||| ||||||  | ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||     
T  34018199 catgcacaagtaactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttattgatccaatggtaaaaactagcttg 34018298  T
Q  416 tgcatgatgcaagacttgtctcacttgtgca 446  Q
    |||||||||||||||||||||||||| ||||    
T  34018299 tgcatgatgcaagacttgtctcacttatgca 34018329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 301 - 444
Target Start/End: Original strand, 4472242 - 4472384
Alignment:
Q  301 aaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatg 400  Q
    ||||||||||||||||||||||||||||| ||| ||| | | | |||| |||||||||||| ||||||||||||||| |||  |||||||||||| ||||    
T  4472242 aaaatggtcttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatg 4472341  T
Q  401 gtgaaaactagcttatgcatgatgcaagacttgtctcacttgtg 444  Q
    || |||||||  |||||| | |||||||| |||||| |||||||    
T  4472342 gt-aaaactaatttatgcgtaatgcaagatttgtctaacttgtg 4472384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 443
Target Start/End: Original strand, 5654688 - 5654786
Alignment:
Q  345 tcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgt 443  Q
    |||| |||||||||||| |||||||||||||||| |||| ||||||| ||| | ||||||||| | | || || ||||| |||||||||||||| ||||    
T  5654688 tcaataagtcatatcatatctcatttaatttaatagtggaatttatttatcaagtggtgaaaatttgtttctgtatgatacaagacttgtctcatttgt 5654786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 444
Target Start/End: Complemental strand, 34856551 - 34856393
Alignment:
Q  279 gctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaat 378  Q
    |||||||| ||||| |||||| ||||| |||||||| |||||||||||||| ||| ||  ||| | | || ||| |  ||||| | || |||||||||||    
T  34856551 gctttgtctaacatgcacaagcaaaatagtcttgcaccatgcacaagtgtctttttcataattggataaagaagccgcatcatatttcttttaatttaat 34856452  T
Q  379 tgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtg 444  Q
     |||       ||| || ||||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  34856451 ggtg-------ttggtcaaatggtggaaactagcttaagcatgatgcaagactcgtctcacttgtg 34856393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 409
Target Start/End: Original strand, 41957463 - 41957597
Alignment:
Q  277 aggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcc--tttgcaccattagttcaaaaagtcatatcatttctcatttaatt 374  Q
    |||| ||||| ||||| |||||| |||||||||||||| ||||||||| ||||   ||| |  |||| | | ||||||||||||||| | | ||||||||    
T  41957463 aggccttgtctaacatgcacaagtaaaatggtcttgcaccatgcacaaatgtctaatttccgtcattggattaaaaagtcatatcatattttatttaatt 41957562  T
Q  375 taattgtgggatttattgatccaatggtgaaaact 409  Q
    |||| |||  |||||||||| |||||||| |||||    
T  41957563 taatcgtgaaatttattgattcaatggtggaaact 41957597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 439
Target Start/End: Complemental strand, 38825871 - 38825797
Alignment:
Q  365 tcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcac 439  Q
    ||||||| |||| | ||| |||||||| || |||||| ||||| ||| |||||||||||||||||||||||||||    
T  38825871 tcatttagtttattggtgagatttattaatgcaatggagaaaaatagtttatgcatgatgcaagacttgtctcac 38825797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 410
Target Start/End: Original strand, 11109571 - 11109673
Alignment:
Q  308 tcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaa 407  Q
    ||||||||||||||||| | ||||||  || ||| | ||||  | ||||||||| || ||||||||||||| || | |||||||||||| | | ||||||    
T  11109571 tcttgcatcatgcacaaatatcctttttactatttgatcaatcaatcatatcatatcccatttaatttaatagtagaatttattgatcctacgatgaaaa 11109670  T
Q  408 cta 410  Q
    |||    
T  11109671 cta 11109673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 410
Target Start/End: Original strand, 11595554 - 11595658
Alignment:
Q  308 tcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtg--ggatttattgatccaatggtgaa 405  Q
    ||||||||||||||||| | ||||||  || ||| | ||||  | ||||||||| || ||||||||||||  |||  | |||||||||||||||| ||||    
T  11595554 tcttgcatcatgcacaaatatcctttttactatttgatcaatcattcatatcatatcccatttaatttaaaagtgtagaatttattgatccaatgatgaa 11595653  T
Q  406 aacta 410  Q
    |||||    
T  11595654 aacta 11595658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 432
Target Start/End: Complemental strand, 33474292 - 33474227
Alignment:
Q  367 atttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagactt 432  Q
    |||||||||||| |||  | ||||||||| |||||||||||| | ||| | |||||||||||||||    
T  33474292 atttaatttaatggtgaaacttattgatcaaatggtgaaaacaaccttgtacatgatgcaagactt 33474227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 278 - 446
Target Start/End: Original strand, 33155525 - 33155693
Alignment:
Q  278 ggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaa 377  Q
    ||||||||  ||||| |||||| ||||||||| |||| |||||||||||| | ||| ||||||  | ||||||||||| |||||||||||||||||||||    
T  33155525 ggctttgtttaacatgcacaagcaaaatggtcctgcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa 33155624  T
Q  378 ttgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33155625 tggtgggatttattgatccaatggtgaaaactagcttgtgcatgatgcaagacttgtctcacttgtgca 33155693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 276 - 446
Target Start/End: Original strand, 3769800 - 3769965
Alignment:
Q  276 taggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaattt 375  Q
    |||||||||||  ||||||||||| |||||| ||||||| ||||||||||||| |||| ||||||| | |||| |||||||||||| |||||||| || |    
T  3769800 taggctttgtctcacatacacaagtaaaatg-tcttgcaccatgcacaagtgttcttttcaccattggatcaacaagtcatatcatatctcatttgatct 3769898  T
Q  376 aattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    ||| ||||||||    | ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  3769899 aatggtgggatt----ggtccaatggtgaaaactaacttgtgcatgatgcaagacttgtttcacttgtgca 3769965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 424
Target Start/End: Complemental strand, 2819087 - 2818964
Alignment:
Q  301 aaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatg 400  Q
    |||||||||||||| |||||||||  ||| |||  || ||| | |||| ||||   ||||| | ||||||||| |||| ||| |||||||||||||||||    
T  2819087 aaaatggtcttgcaccatgcacaaacgtcttttttactattggatcaataagttgcatcatatttcatttaatctaatggtgagatttattgatccaatg 2818988  T
Q  401 gtgaaaactagcttatgcatgatg 424  Q
     ||||||||| ||| || ||||||    
T  2818987 atgaaaactaacttgtgtatgatg 2818964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 441
Target Start/End: Complemental strand, 19386869 - 19386806
Alignment:
Q  378 ttgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcactt 441  Q
    ||||| ||||||||||| ||||||| |||| |||||| |||||||||| ||| |||||||||||    
T  19386869 ttgtgagatttattgatgcaatggtaaaaattagcttgtgcatgatgcgagatttgtctcactt 19386806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 25928067 - 25928122
Alignment:
Q  384 gatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcac 439  Q
    |||||||||||| ||||||||||| ||| || |||||||||||||| || ||||||    
T  25928067 gatttattgatctaatggtgaaaattagtttgtgcatgatgcaagatttatctcac 25928122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 276 - 446
Target Start/End: Complemental strand, 40386460 - 40386291
Alignment:
Q  276 taggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaattt 375  Q
    ||||||||||| ||||| || ||  |||| ||| ||||| |||||||||||||| ||||||||||| | |||||| |||| || |||  |||||||||||    
T  40386460 taggctttgtctaacatgcaaaaacaaaaaggttttgcaccatgcacaagtgtcttttgcaccattggatcaaaa-gtcacataattattcatttaattt 40386362  T
Q  376 aattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    ||| ||| |||||||||||||||||||| ||||| |||| |||||||||||| ||||||  ||||||||||    
T  40386361 aatagtgagatttattgatccaatggtggaaactggcttgtgcatgatgcaaaacttgttacacttgtgca 40386291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 277 - 446
Target Start/End: Original strand, 49596626 - 49596796
Alignment:
Q  277 aggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaattta 376  Q
    |||||||||| |||||  ||||| ||||| ||||| ||||||||||| ||||| ||| || |||||| | ||||||||| ||||| | || |||||||||    
T  49596626 aggctttgtctaacatggacaagcaaaatagtcttacatcatgcacacgtgtcatttccatcattagattaaaaagtcacatcatatttcgtttaattta 49596725  T
Q  377 attgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagactt-gtctcacttgtgca 446  Q
    || ||| ||||||||| | |||||||| ||| ||||||| ||||||| |||||||| |||||| |||||||    
T  49596726 atagtgagatttattggttcaatggtggaaattagcttacgcatgatacaagacttggtctcatttgtgca 49596796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 277 - 440
Target Start/End: Complemental strand, 42347474 - 42347312
Alignment:
Q  277 aggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaattta 376  Q
    |||||||||| ||  | |||||| |||||||||||||| |||| | ||||||||||| ||||||| | | || |||||  ||||| |||||| |||||||    
T  42347474 aggctttgtctaaattgcacaagcaaaatggtcttgcaccatgaataagtgtccttttcaccattggattaataagtcgcatcatatctcatataattta 42347375  T
Q  377 attgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcact 440  Q
    ||  || ||||||||||||||||  | ||||||||||| ||||| ||||||||||||| |||||    
T  42347374 atgatgagatttattgatccaataataaaaactagcttgtgcat-atgcaagacttgtttcact 42347312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 420
Target Start/End: Complemental strand, 20753349 - 20753206
Alignment:
Q  277 aggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaattta 376  Q
    ||||||||||  |||| |||||| ||||||||||| || | || |||| |||| ||| ||||||| ||||||||||||| || || | |||||| |||||    
T  20753349 aggctttgtcttacatgcacaagtaaaatggtcttccaccgtgtacaaatgtcttttccaccattggttcaaaaagtcacattatatttcatttcattta 20753250  T
Q  377 attgtgggatttattgatccaatggtgaaaactagcttatgcat 420  Q
    |   || ||||||||||||| ||| || ||||||||||||||||    
T  20753249 acgatgagatttattgatccgatgatggaaactagcttatgcat 20753206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 446
Target Start/End: Complemental strand, 35052626 - 35052468
Alignment:
Q  281 tttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattg 380  Q
    |||||| ||||| |||||| |||||| | |||||||||||||||||||| ||| ||||||| | ||||||||||| ||||| | | ||||| ||||        
T  35052626 tttgtctaacatgcacaagcaaaatgatattgcatcatgcacaagtgtcttttccaccattggatcaaaaagtcacatcatatttaatttatttta---- 35052531  T
Q  381 tgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    | |||   || |||||||||||  ||| |||||  |||||||||||| | ||||||||||||||||    
T  35052530 ttgga---atcgatccaatggtagaaattagctcgtgcatgatgcaaaatttgtctcacttgtgca 35052468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 448
Target Start/End: Original strand, 2585899 - 2586012
Alignment:
Q  335 caccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgt 434  Q
    |||| |||| |||| ||||||||| || |||||||||||||||   ||  ||||||| ||| |||||| |||||||| ||||  |||||||||||||| |    
T  2585899 caccgttagatcaataagtcatattatatctcatttaatttaacaatgaaatttatttatctaatggttaaaactagtttatagatgatgcaagacttat 2585998  T
Q  435 ctcacttgtgcatc 448  Q
    |||| |||||||||    
T  2585999 ctcatttgtgcatc 2586012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 49995011 - 49995092
Alignment:
Q  365 tcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    |||||||||||||| |||| |||||| |||  ||||   |||||||  || |||||||||||||||||||||||||||||||    
T  49995011 tcatttaatttaatggtggaatttatcgatgtaatgtcaaaaactaatttgtgcatgatgcaagacttgtctcacttgtgca 49995092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 48184550 - 48184616
Alignment:
Q  370 taatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtct 436  Q
    |||| |||| ||| ||||||||||| ||||||  |||||||| || |||||||||||||||||||||    
T  48184550 taatctaatggtgagatttattgattcaatggcaaaaactaggttgtgcatgatgcaagacttgtct 48184616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 4221701 - 4221643
Alignment:
Q  371 aatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaaga 429  Q
    |||||||| ||| |||||||||||||||| ||||||| ||| || ||| ||||||||||    
T  4221701 aatttaatggtgagatttattgatccaatagtgaaaattagtttgtgcgtgatgcaaga 4221643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 7882811 - 7882868
Alignment:
Q  321 acaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaat 378  Q
    ||||||||| |||  || ||||| || |||||| ||||||||||||||||||||||||    
T  7882811 acaagtgtcgtttttactattagatccaaaagttatatcatttctcatttaatttaat 7882868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 17106026 - 17105986
Alignment:
Q  366 catttaatttaattgtgggatttattgatccaatggtgaaa 406  Q
    ||||||||||||| ||||| |||||| ||||||||||||||    
T  17106026 catttaatttaatggtgggttttattaatccaatggtgaaa 17105986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 281 - 441
Target Start/End: Original strand, 46981316 - 46981474
Alignment:
Q  281 tttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattg 380  Q
    |||||| ||||| ||||||  ||||||||||||| |||||||||||| | ||| ||||||| | |||||||||||||  |||||||| |||||||||| |    
T  46981316 tttgtctaacatgcacaagctaaatggtcttgcaccatgcacaagtgccgttttcaccattggatcaaaaagtcata--atttctcaattaatttaatgg 46981413  T
Q  381 tgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcactt 441  Q
    ||  | ||||||||||||||||||||| |||||| | | ||||||||||||| ||| ||||    
T  46981414 tgtaaattattgatccaatggtgaaaattagcttgtacttgatgcaagacttatcttactt 46981474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 448
Target Start/End: Complemental strand, 23940630 - 23940529
Alignment:
Q  347 aaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    |||||||| ||| || | |||||||||||||| ||| |||||||||||| || | |||||| |||||| ||||||||||||||| | |||||||||||||    
T  23940630 aaaaagtcgtattatatttcatttaatttaatggtgagatttattgatctaacgatgaaaagtagcttgtgcatgatgcaagacatatctcacttgtgca 23940531  T
Q  447 tc 448  Q
    ||    
T  23940530 tc 23940529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 281 - 446
Target Start/End: Complemental strand, 6857071 - 6856902
Alignment:
Q  281 tttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattg 380  Q
    |||||| |||||  ||||| ||||| | |||||| ||||||||||| || ||| ||||||||| | ||||||| | ||||  | ||||||||||| ||      
T  6857071 tttgtctaacatgtacaagcaaaatagccttgcaccatgcacaagtttcttttccaccattagataaaaaagtaacatcaaatttcatttaatttgatgt 6856972  T
Q  381 tgggatttatt----gatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    || |||||| |    ||||||||| || |||||||| |||||||||||||||||| ||||||||||||||    
T  6856971 tgagatttacttactgatccaatgatggaaactagcctatgcatgatgcaagactcgtctcacttgtgca 6856902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 39611732 - 39611793
Alignment:
Q  385 atttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    ||||||||||||||||||| ||| ||| |||| ||| |||||||||||| ||||||||||||    
T  39611732 atttattgatccaatggtgcaaaatagtttattcattatgcaagacttgcctcacttgtgca 39611793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 445
Target Start/End: Original strand, 37105485 - 37105580
Alignment:
Q  350 aagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgc 445  Q
    |||||| || || |||||||||||||||| |||| |||||||| |||  | |||||||||||||| ||||| |  ||| || ||||||||||||||    
T  37105485 aagtcacattatatctcatttaatttaatagtggaatttattgctccggtagtgaaaactagcttgtgcattaaacaaaacatgtctcacttgtgc 37105580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 11457679 - 11457626
Alignment:
Q  338 cattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttatt 391  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||| |||||||    
T  11457679 cattagatcaaaaagtcacatcacttctcatttaatttaatggtggaatttatt 11457626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 443
Target Start/End: Complemental strand, 5989748 - 5989672
Alignment:
Q  367 atttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgt 443  Q
    ||||||||||||  ||  ||||||||||||| ||||||||| ||  |||||| ||||| ||||||||||| ||||||    
T  5989748 atttaatttaatgttgacatttattgatccattggtgaaaattatattatgcgtgatgtaagacttgtcttacttgt 5989672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 446
Target Start/End: Original strand, 26853088 - 26853246
Alignment:
Q  288 aacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatt 387  Q
    ||||| |||||| ||||||||||||||||||| | || |||| ||| |||| || | | || |||| | ||| | | ||||||| |||||| ||  ||||    
T  26853088 aacatgcacaagtaaaatggtcttgcatcatgaaaaaatgtctttttcaccgttggattaataagtaacatcttatatcatttagtttaatggtaagatt 26853187  T
Q  388 tattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    |||| ||| |||  | ||||||| ||| ||||||||  |||||| ||||||||| ||||    
T  26853188 tattaatctaataataaaaactaacttgtgcatgataaaagactcgtctcacttatgca 26853246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 438
Target Start/End: Complemental strand, 34113770 - 34113633
Alignment:
Q  301 aaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatg 400  Q
    ||||| |||||||||||||||||||| || |||  | |||| | |||| |||||| ||||| | |||||||||||||| ||| ||||||||||| |||||    
T  34113770 aaaattgtcttgcatcatgcacaagtatcatttatatcatttgatcaataagtcacatcatatatcatttaatttaatagtgagatttattgattcaatg 34113671  T
Q  401 gtgaaaactagcttatgcatgatgcaagacttgtctca 438  Q
     | ||||||| ||||| |||||||||| ||||||||||    
T  34113670 ataaaaactaacttatacatgatgcaacacttgtctca 34113633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 417
Target Start/End: Complemental strand, 8482480 - 8482358
Alignment:
Q  295 acaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgat 394  Q
    ||||| ||||||||||||||  ||||||||| |||   | ||||||||| |||||||||||| |||| | |||||||||||||| |||  |||||||||     
T  8482480 acaagaaaaatggtcttgcactatgcacaagcgtctgatccaccattagatcaaaaagtcatgtcatatttcatttaatttaatggtgaaatttattgaa 8482381  T
Q  395 ccaatggtgaaaactagcttatg 417  Q
    ||||||||||||||||| |||||    
T  8482380 ccaatggtgaaaactagtttatg 8482358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 43405293 - 43405221
Alignment:
Q  276 taggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaa 348  Q
    |||| |||||| |||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||| ||||    
T  43405293 taggttttgtctaacatacacaagtaaaatgatcttgcatcatgcacaagtatccttttcaccattagatcaa 43405221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 446
Target Start/End: Complemental strand, 43613779 - 43613635
Alignment:
Q  301 aaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatg 400  Q
    ||||||||||| || |||| | |||| || |||  | ||| || |||| |||||||||||  |||||||||||| ||| || | |||||||||| |||      
T  43613779 aaaatggtcttacaccatgtataagtatcttttttatcatcagatcaataagtcatatcacgtctcatttaattaaatggttgaatttattgat-caaca 43613681  T
Q  401 gtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    ||||||||||| || ||  |||||||||||||||||||||||||||    
T  43613680 gtgaaaactagtttgtgtttgatgcaagacttgtctcacttgtgca 43613635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 446
Target Start/End: Complemental strand, 6365280 - 6365186
Alignment:
Q  352 gtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    ||||||| || ||| |||||||||||| |||  |||||||||||||||| | |||| || | ||||||||||||||||| ||| |||||| ||||    
T  6365280 gtcatattatatcttatttaatttaatagtgaaatttattgatccaatgataaaaattaacatatgcatgatgcaagacgtgtttcacttatgca 6365186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 448
Target Start/End: Original strand, 15835339 - 15835449
Alignment:
Q  338 cattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctc 437  Q
    |||||| ||||||||||  ||||| | | |||| | ||||| |||  ||||||||||||||| | |||| ||||||| |||||||| ||||||||||| |    
T  15835339 cattagatcaaaaagtcgcatcatattttatttcacttaatcgtgaaatttattgatccaattgcgaaacctagcttctgcatgatacaagacttgtcac 15835438  T
Q  438 acttgtgcatc 448  Q
    |||||| ||||    
T  15835439 acttgttcatc 15835449  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 438
Target Start/End: Original strand, 26688736 - 26688819
Alignment:
Q  354 catatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctca 438  Q
    ||||| || |||||||||||||||| |||| | ||||||||| |||| |||||||||  ||| ||||||||||||| ||||||||    
T  26688736 catatgatatctcatttaatttaatggtgg-agttattgatcaaatgatgaaaactaatttaggcatgatgcaagatttgtctca 26688819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 56127427 - 56127371
Alignment:
Q  390 ttgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    |||| |||||||||||||| || || |||||| ||||||||||||||||||||||||    
T  56127427 ttgaaccaatggtgaaaacaagtttgtgcatggtgcaagacttgtctcacttgtgca 56127371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 434
Target Start/End: Original strand, 36158935 - 36159023
Alignment:
Q  347 aaaaagtcatatcatttctcatttaatttaattgtgggat-ttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgt 434  Q
    ||||||| || ||||| ||||||||||||||| |||| || || |||||  |||||| |||||||| || |||||||| ||| ||||||    
T  36158935 aaaaagttatgtcattcctcatttaatttaatggtggaatattgttgatttaatggtaaaaactagtttgtgcatgatacaaaacttgt 36159023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 51079131 - 51079059
Alignment:
Q  374 ttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    ||||| |||| ||||||||||||||| ||| |||| | ||| |||||| |||||||||| |||  ||||||||    
T  51079131 ttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgca 51079059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 281 - 437
Target Start/End: Complemental strand, 2188856 - 2188700
Alignment:
Q  281 tttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattg 380  Q
    |||||| |||||||| |||||||||| |||| | ||||| |||| |||  ||| ||  |||   | ||||| ||||||||| | ||||||||||||||||    
T  2188856 tttgtctaacatacataaggaaaatgatcttacttcatggacaaatgttttttccaaaattgaattaaaaaatcatatcatatttcatttaatttaattg 2188757  T
Q  381 tgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctc 437  Q
    |  ||||||||||||||| |||  |||||||||| | |||||||||||| |||||||    
T  2188756 taagatttattgatccaaaggtagaaactagcttctacatgatgcaagatttgtctc 2188700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 316 - 443
Target Start/End: Complemental strand, 2572391 - 2572263
Alignment:
Q  316 catgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttct-catttaatttaattgtgggatttattgatccaatggtgaaaactagctt 414  Q
    |||||||||||||  |||  |||||||| |||| |||||| ||||  ||| ||| ||||||||| ||| ||||||||| ||||||| | |||||||  ||    
T  2572391 catgcacaagtgttttttttaccattagatcaataagtcacatcacatcttcatataatttaatcgtgagatttattggtccaatgtttaaaactaaatt 2572292  T
Q  415 atgcatgatgcaagacttgtctcacttgt 443  Q
     |||||||||||||| |||||| ||||||    
T  2572291 ttgcatgatgcaagatttgtcttacttgt 2572263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 429
Target Start/End: Complemental strand, 13587667 - 13587603
Alignment:
Q  365 tcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaaga 429  Q
    ||||| |||||||| ||| |||||||||||||||||||  |||| | |||||||||| |||||||    
T  13587667 tcattcaatttaatagtgagatttattgatccaatggtagaaacaaccttatgcatggtgcaaga 13587603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 444
Target Start/End: Original strand, 957180 - 957297
Alignment:
Q  326 tgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgc 425  Q
    ||||||||  |||||||  |||| |||| | || || ||||||| |||||||| ||| | ||| |||||| ||| || ||||||| ||||| ||| ||||    
T  957180 tgtcctttttaccattaagtcaataagtgacattatatctcattaaatttaatggtgaggttt-ttgatctaattgtaaaaactaacttatacataatgc 957278  T
Q  426 aagacttgtctcacttgtg 444  Q
    |||| ||||||||||||||    
T  957279 aagatttgtctcacttgtg 957297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 448
Target Start/End: Complemental strand, 39742624 - 39742516
Alignment:
Q  340 ttagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcac 439  Q
    |||| |||| ||||||| |||| | |||||||||||||| |||||||||||||||| || ||| |||||||| || | ||||||||| |  |||||||||    
T  39742624 ttagatcaataagtcatgtcatatttcatttaatttaatggtgggatttattgatctaagggtaaaaactagtttgtacatgatgcagggtttgtctcac 39742525  T
Q  440 ttgtgcatc 448  Q
    ||| |||||    
T  39742524 ttgggcatc 39742516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 448
Target Start/End: Complemental strand, 46014588 - 46014498
Alignment:
Q  358 tcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgcatc 448  Q
    |||| ||||||| |||||||| || ||||| ||||||| |||| ||||||||||||| | |||||| |||||| | |||||||||||||||    
T  46014588 tcatatctcattaaatttaatagttggattcattgatctaatgatgaaaactagcttgtacatgatacaagacatatctcacttgtgcatc 46014498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 7890467 - 7890383
Alignment:
Q  352 gtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtct 436  Q
    |||| ||||| | |||||||||||||| |||  ||||||||||||||| ||||||||||  || |||||||||||| ||||||||    
T  7890467 gtcacatcatatttcatttaatttaatggtgaaatttattgatccaatagtgaaaactactttgtgcatgatgcaatacttgtct 7890383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 447
Target Start/End: Complemental strand, 8041459 - 8041396
Alignment:
Q  384 gatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgcat 447  Q
    |||||||||||  |||| |||||||||||||||| ||||||||| |||||| ||| ||||||||    
T  8041459 gatttattgatttaatgttgaaaactagcttatgtatgatgcaaaacttgtttcaattgtgcat 8041396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 444
Target Start/End: Original strand, 27925348 - 27925454
Alignment:
Q  338 cattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctc 437  Q
    |||||| |||| || ||| ||||| |||||||| |||||||  ||  ||||||||||||||||||| |||||| |||||||| |||  || | |||||||    
T  27925348 cattagatcaataaatcacatcatatctcattttatttaatcatgaaatttattgatccaatggtggaaactaacttatgcaagatataaaatttgtctc 27925447  T
Q  438 acttgtg 444  Q
     ||||||    
T  27925448 gcttgtg 27925454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 6586936 - 6586876
Alignment:
Q  372 atttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagactt 432  Q
    |||||||||||| ||||||||||||||| ||||||| ||| || |||||||| ||| ||||    
T  6586936 atttaattgtggtatttattgatccaatagtgaaaattagattgtgcatgatacaaaactt 6586876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 436
Target Start/End: Complemental strand, 7890333 - 7890265
Alignment:
Q  368 tttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtct 436  Q
    ||||||||| | |||  |||||||||| ||| |||||||| ||| || |||||||||||||||||||||    
T  7890333 tttaatttagtggtgaaatttattgattcaagggtgaaaattagtttgtgcatgatgcaagacttgtct 7890265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 49920368 - 49920309
Alignment:
Q  357 atcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttat 416  Q
    ||||| |||||||| ||||||| ||| |||||||||||||||| ||| |||||| |||||    
T  49920368 atcatatctcatttgatttaatggtgtgatttattgatccaattgtggaaactaacttat 49920309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 423
Target Start/End: Complemental strand, 7817376 - 7817340
Alignment:
Q  387 ttattgatccaatggtgaaaactagcttatgcatgat 423  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  7817376 ttattgatccaattgtgaaaactagcttgtgcatgat 7817340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 443
Target Start/End: Original strand, 37609341 - 37609415
Alignment:
Q  369 ttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgt 443  Q
    |||||||||||||| |||||| ||||| ||||||| |||| | |  ||||||||||||||||||||| |||||||    
T  37609341 ttaatttaattgtgagatttaatgatctaatggtggaaaccaacggatgcatgatgcaagacttgtcccacttgt 37609415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 446
Target Start/End: Original strand, 4522266 - 4522418
Alignment:
Q  294 cacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattga 393  Q
    |||||| ||||| |||||||||||| ||||||||| | || |||||||   |||| |||||  ||||| |||||||| || || | ||| |  |||||||    
T  4522266 cacaagtaaaatagtcttgcatcattcacaagtgtgcctttcaccattgaatcaataagtcccatcatatctcatttgatctactggtgaggcttattga 4522365  T
Q  394 tccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    |||| || || ||||||  || ||||||||||||||||| ||| |||| ||||    
T  4522366 tccagtgatggaaactaatttgtgcatgatgcaagacttatcttacttttgca 4522418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 446
Target Start/End: Complemental strand, 38318137 - 38318054
Alignment:
Q  363 tctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 446  Q
    |||||||||||||||| ||   ||||||||||| ||| |||||| |||  ||||  |||||||||||||||| ||| |||||||    
T  38318137 tctcatttaatttaatggtaaaatttattgatcaaatagtgaaagctaatttatatatgatgcaagacttgtttcatttgtgca 38318054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 429
Target Start/End: Complemental strand, 17104665 - 17104575
Alignment:
Q  339 attagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaaga 429  Q
    ||||| ||||||||||| ||| | | |||||||||| |||  ||||||||||||||| |||  | |||| ||| |||| ||||||||||||    
T  17104665 attagatcaaaaagtcacatcttatttcatttaattgaatgatgggatttattgatcaaataataaaaattagtttatacatgatgcaaga 17104575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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