View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_18 (Length: 455)
Name: NF20578_low_18
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_18 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 145 - 440
Target Start/End: Complemental strand, 100795 - 100500
Alignment:
| Q |
145 |
ttttgattgtaaatctatatatcctttgttccaaaatattgtaaagaaatgaattagatagttggagggtaaaccatacaaatagaatggtatgtattca |
244 |
Q |
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| T |
100795 |
ttttgattgtaaatctatatatcatttgttccaaaatattgtaaagaaatgaattagatagttggagggtaaaccatacaaatagaatggtatgtattca |
100696 |
T |
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| Q |
245 |
tattcatttagtagtgtcggtggtgaaatgatgattattgaatatgataatgataagtagtagtagtaattaagtacctgaaaacgccataggaggtcac |
344 |
Q |
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| T |
100695 |
tattcatttagtagtgtcggtggtgaaatgatgattattgaatatgatgataatgataggtagtagtaattaagtacctgaaaacgccataggaggtcac |
100596 |
T |
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| Q |
345 |
cacagggcttgaccttgaatctgttgtcatagaaattcttacgagcttcttcaacttgtgctctttcttcttcactacctgcttctggatcatact |
440 |
Q |
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| T |
100595 |
cacagggcttgaccttgaatctgttgtcatagaaattcttacgagcttcttcaacttgtgctctttcttcttcactacctgcttctggatcatact |
100500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 100943 - 100816
Alignment:
| Q |
16 |
atgaacatgatgtattattattagtttaacttttatacattaggtaaaaaattattatccacaaataaaaaactcactaattagtagtttgtgtgatttt |
115 |
Q |
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| T |
100943 |
atgaacatgatgtattatta---gtttaacttttatacattaggtaaaaaattattatccacaaataaaaa-ctcactaattagtagtttgtgtgatttt |
100848 |
T |
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| Q |
116 |
agaatttgatttgattaaagttaaacaccttt |
147 |
Q |
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| T |
100847 |
agaatttgatttgattaaagttaaacaccttt |
100816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 318 - 440
Target Start/End: Complemental strand, 154501 - 154379
Alignment:
| Q |
318 |
gtacctgaaaacgccataggaggtcaccacagggcttgaccttgaatctgttgtcatagaaattcttacgagcttcttcaacttgtgctctttcttcttc |
417 |
Q |
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| T |
154501 |
gtacctgaaaacgccaaaggagatcaccacaggtcttaacattgaagcggttattatagaaattcttacgagcttcttcaacttgtgctctttcttcttc |
154402 |
T |
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| Q |
418 |
actacctgcttctggatcatact |
440 |
Q |
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| T |
154401 |
actacctgcttctggatcatact |
154379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 315 - 435
Target Start/End: Original strand, 10307657 - 10307777
Alignment:
| Q |
315 |
taagtacctgaaaacgccataggaggtcaccacagggcttgaccttgaatctgttgtcatagaaattcttacgagcttcttcaacttgtgctctttcttc |
414 |
Q |
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| T |
10307657 |
taagtacctgaaaacgcgaaaggaggtcaccacaggtcttaaccttgaaacggttattatagaaattcttacgaacttcttcaacttgagctctctcttc |
10307756 |
T |
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| Q |
415 |
ttcactacctgcttctggatc |
435 |
Q |
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| T |
10307757 |
ttcactacctgcttctggatc |
10307777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 318 - 440
Target Start/End: Original strand, 102162 - 102284
Alignment:
| Q |
318 |
gtacctgaaaacgccataggaggtcaccacagggcttgaccttgaatctgttgtcatagaaattcttacgagcttcttcaacttgtgctctttcttcttc |
417 |
Q |
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| T |
102162 |
gtacctgaaaacgccagaggagatcaccgcagggcttgactttgaagcggttgttatagaaattcttacgagcttcttcaacttgggccctctcttcttc |
102261 |
T |
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| Q |
418 |
actacctgcttctggatcatact |
440 |
Q |
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| T |
102262 |
actacctgcttctggatcatact |
102284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 318 - 440
Target Start/End: Complemental strand, 13041421 - 13041299
Alignment:
| Q |
318 |
gtacctgaaaacgccataggaggtcaccacagggcttgaccttgaatctgttgtcatagaaattcttacgagcttcttcaacttgtgctctttcttcttc |
417 |
Q |
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|||||||||||||||| |||||||||| ||| ||||||| || || | ||||| ||| ||||||| |||||||||||||||||||||||| || || |
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| T |
13041421 |
gtacctgaaaacgccaaaggaggtcactacatagcttgactttaaagcggttgttataaaaattctgacgagcttcttcaacttgtgctctctcctccaa |
13041322 |
T |
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| Q |
418 |
actacctgcttctggatcatact |
440 |
Q |
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| T |
13041321 |
agtacctgcttttggatcatact |
13041299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 12143011 - 12143092
Alignment:
| Q |
318 |
gtacctgaaaacgccataggaggtcaccacagggcttgaccttgaatctgttgtcatagaaattcttacgagcttcttcaac |
399 |
Q |
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| T |
12143011 |
gtacctgaaagcgccaaaggaggtcgccacatggcttaaccttaaatcggttgatatagaaattgtgacgagcttcttcaac |
12143092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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