View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_20 (Length: 437)
Name: NF20578_low_20
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 132 - 398
Target Start/End: Original strand, 26556444 - 26556710
Alignment:
| Q |
132 |
ttgagactattttgtttcattggtttggtctcagacatatagcacattacattatctttatttgattctcagcttccatgctatcctctaccgaatgttt |
231 |
Q |
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| T |
26556444 |
ttgagactattttgtttcattggtttggtctcagacatatagcacattacattatctttatttgattctcagcttccatgctatcctctaccgaatgttt |
26556543 |
T |
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| Q |
232 |
ccaatacattctgcgtcgtctctgacatgaatttttaacttcgcatcacacgaataaatggaagctttgcatcttgtaacttgctagtataaaattccaa |
331 |
Q |
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| T |
26556544 |
ccaatacattctgcgtcgtctcagacatgaatttttaacttcgcatcacacgaataaatggaagcttcgcatcttgtaacttgctagtataaaattccaa |
26556643 |
T |
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| Q |
332 |
tatatgaagataatgcattgtattgccaatggtatattttgtttgcagaaatataatttattctatt |
398 |
Q |
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| T |
26556644 |
tatatgaagataatgcattgtattgccaatggtatattttgtttgcagaaatataatttattctatt |
26556710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 76 - 381
Target Start/End: Original strand, 26563880 - 26564186
Alignment:
| Q |
76 |
ttttgaaaatgaaagtgttaaaaaggtgggtgataatatgtagagctgttttagacttgagactattttgtttcattggtttggtct-cagacatatagc |
174 |
Q |
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| T |
26563880 |
ttttgaaaatgaaagtgtcaagaaggtgggtgataatatgtagagctgctttagacttgagactattttgtttcattggtttggtccacctacatatagc |
26563979 |
T |
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| Q |
175 |
acattacattatctttatttgattctcagcttccatgctatcctctaccgaatgtttccaatacattctgcgtcgtctctgacatgaatttttaacttcg |
274 |
Q |
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| T |
26563980 |
acattaccttatctttatttgttcctcagcttccttgctatcatctaccaaaggtttccaatacattctacgtcgtctcagacatgaattttttacttgg |
26564079 |
T |
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| Q |
275 |
catcacacgaataaatggaagctttgcatcttgtaacttgctagtataaaattccaatatatgaagataatgcattgtattgccaatggtatattttgtt |
374 |
Q |
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| T |
26564080 |
catcacacgaataaatggcagctttgcatcttgctacttgctagtataaaattccaatatatgaagagcatgcattgtattgccaatgatatattttgtt |
26564179 |
T |
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| Q |
375 |
tgcagaa |
381 |
Q |
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||||||| |
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| T |
26564180 |
tgcagaa |
26564186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 26556387 - 26556426
Alignment:
| Q |
12 |
atgaaaggatgaggtgaagaaggcgatctattgaagcaag |
51 |
Q |
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| T |
26556387 |
atgaaaggatgaggtgaagaaggcgatctattgaagcaag |
26556426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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