View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20578_low_24 (Length: 405)
Name: NF20578_low_24
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 33162666 - 33163066
Alignment:
| Q |
15 |
tcaaatctgatagccatttatttgtcacacgtgtgtctttgcttaccatgtagggtataagtttgtaggtggttagggttggagttggttaggcgaataa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33162666 |
tcaaatctgatagccatttatttgtcacacgtgtgtctttgcttaccatgtggggtataagtttgtaggtggttagggttggagttggttaggcgaataa |
33162765 |
T |
|
| Q |
115 |
tggagatagggacggtgaccatggtagttgactgggatatggagcataaagtaatcctcactcccaccccaatcggtagatatctcaatgagg------g |
208 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33162766 |
tggagatagggacagtgaccatgttagttgactgggatatggagcataaagtaatcctcactcccaccccaatcggtagatatctcaatgaggagtgtag |
33162865 |
T |
|
| Q |
209 |
a-------------gtatgtcatttagaacttgccttattttggattttatatacatacatacatacatatttggtagcattcttttaaaaggaatggtt |
295 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
33162866 |
atgaatatgagtatgtatgtcatttagaaattgccttattttggattttacatacatacatacatgcatatttggtagccttcttttaaaaggaatggtt |
33162965 |
T |
|
| Q |
296 |
gaaactaaaacatgactt-aagtgagacatgtacaattcatgtgtcaattctcattccatcgcttacgcatcagcacattaacgcttcctcacatcctat |
394 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |||||||||||||||||| ||| |
|
|
| T |
33162966 |
gaaactaaaacatgacttaaagtgagacatgtacaattcatgtgtcaattctcattccatcgcttaggcatcatcgcgttaacgcttcctcacatcttat |
33163065 |
T |
|
| Q |
395 |
g |
395 |
Q |
| |
|
| |
|
|
| T |
33163066 |
g |
33163066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 360
Target Start/End: Original strand, 29778511 - 29778578
Alignment:
| Q |
293 |
gttgaaactaaaacatgacttaagtgagacatgtacaattcatgtgtcaattctcattccatcgctta |
360 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| ||| |||||||||| |||||| | ||||||||| |
|
|
| T |
29778511 |
gttgaaattaaatcatgacttaagtgagacatgtgcaaatcatgtgtcagttctcactacatcgctta |
29778578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 39627961 - 39628053
Alignment:
| Q |
14 |
atcaaatctgatagccatttatttgtcacacgtgtgtctttgcttaccatgtagggtataa-gtttgtaggtggttagggttggagttggttagg |
107 |
Q |
| |
|
||||||| ||||||| ||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||| || | |||||||||| |
|
|
| T |
39627961 |
atcaaatttgatagctatttatttgtcgca--tgtgtctttgcttaccatgtgcagtataatgtttgtaggtggttaggtttagggttggttagg |
39628053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 18097451 - 18097406
Alignment:
| Q |
281 |
ttaaaaggaatggttgaaactaaaacatgacttaagtgagacatgt |
326 |
Q |
| |
|
|||||||||||| |||| | |||||||||||||||||||| ||||| |
|
|
| T |
18097451 |
ttaaaaggaatgattgagattaaaacatgacttaagtgagtcatgt |
18097406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 48350244 - 48350200
Alignment:
| Q |
301 |
taaaacatgacttaagtgagacatgtacaattcatgtgtcaattc |
345 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
48350244 |
taaaacatgacttaagtgagacatgtggaaatcatgtgtcaattc |
48350200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 4154506 - 4154457
Alignment:
| Q |
14 |
atcaaatctgatagccatttatttgtcacacgtgtgtctttgcttaccatgt |
65 |
Q |
| |
|
||||||| ||||||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
4154506 |
atcaaatttgatagccatttatttgtcgca--tgtgtctttgcttatcatgt |
4154457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University