View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_25 (Length: 394)
Name: NF20578_low_25
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 30025123 - 30024758
Alignment:
| Q |
19 |
gtaacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaacgaccaagatttctacgacgttagtcttgtggacggttacaatct |
118 |
Q |
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| T |
30025123 |
gtaacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaacgaccaagatttctacgacgttagtcttgtggacggttacaatct |
30025024 |
T |
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| Q |
119 |
tccattaaccataacgccattaaatggtaacggaaaatgtgaattcgccggttgtgttagggatcttaacgtcatgtgtcccatgagccttcaagttagg |
218 |
Q |
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| T |
30025023 |
tccgttaaccataacgccattaaatggtaacggaaaatgtgaattcgccggttgtgttagggatcttaacgtcatgtgtcccatgagccttcaagttagg |
30024924 |
T |
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| Q |
219 |
tcaagtgacatgaatcaagtggtgggttgtaagagtgcttgttatgcttttaactcacctaagtattgttgcacgggtagttatggaagcccacaggctt |
318 |
Q |
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| T |
30024923 |
tcaagtgacatgaatcaagtggtgggctgtaagagtgcttgttatgcttttaactcacctgagtattgttgcacgggtagttatggaagcccacaggctt |
30024824 |
T |
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| Q |
319 |
gtaagcccactagttattcgagaatctttaagttggcttgccctaaggcttactcttatgcctttg |
384 |
Q |
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| T |
30024823 |
gtaagcccactagttattcgagaatctttaagttggcttgccctaaggcttactcttatgcctttg |
30024758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 379
Target Start/End: Complemental strand, 45273361 - 45273198
Alignment:
| Q |
216 |
aggtcaagtgacatgaatcaagtggtgggttgtaagagtgcttgttatgcttttaactcacctaagtattgttgcacgggtagttatggaagcccacagg |
315 |
Q |
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| T |
45273361 |
aggtcacgtgacaagaagcacgtggtgggttgtagaagtgcttgtgctgctttcaactctcctaggtattgctgtactggtaactttggtaccccacaga |
45273262 |
T |
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| Q |
316 |
cttgtaagcccactagttattcgagaatctttaagttggcttgccctaaggcttactcttatgc |
379 |
Q |
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| || ||||||||| |||||| |||||||| || |||||||| ||||||||||||||||| |
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| T |
45273261 |
cctgcaagcccactgcttattcaagaatcttcaaaactgcttgcccaaaggcttactcttatgc |
45273198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 27975688 - 27975645
Alignment:
| Q |
78 |
caagatttctacgacgttagtcttgtggacggttacaatcttcc |
121 |
Q |
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| T |
27975688 |
caagatttctacgacgtgagtctcgtcgacggttacaatcttcc |
27975645 |
T |
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