View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_27 (Length: 383)
Name: NF20578_low_27
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 120 - 362
Target Start/End: Complemental strand, 9666261 - 9666019
Alignment:
| Q |
120 |
acatccaacaccaaaactcactgacccattttcacaaacaccttcaaaatcacaaccaacaccaaatctcaccgacccatcatctgaaatgacaaaagca |
219 |
Q |
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| T |
9666261 |
acatccaacaccaaaactcactgacccattttcacaaacaccttcaaaatcacaaccaacaccaaatctcaccgacccatcatctgaaatgacaaaagca |
9666162 |
T |
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| Q |
220 |
ccctctccagcaccccatggttgataattgggggtgttgtgagagagaataagggaaggtgtgtagagaaagtaggagtaaggagggttgttgttgttgt |
319 |
Q |
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| T |
9666161 |
ccctctccagcaccccatggttgataattgggggtgttgtgagagagaataagggaaggtgtgtagagaaagtaggagtaaggagggttgttgttgttgt |
9666062 |
T |
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| Q |
320 |
tggtattgaaaaatgggattggataattctcgaaggttctgga |
362 |
Q |
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| T |
9666061 |
tggtattgaaaaatgggattggataattctcgaaggttctgga |
9666019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 9666286 - 9666241
Alignment:
| Q |
11 |
catcatcacatacaccttgaaaattacatccaataccaaaactcac |
56 |
Q |
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| T |
9666286 |
catcatcacatacaccttgaaaattacatccaacaccaaaactcac |
9666241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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