View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_28 (Length: 380)

Name: NF20578_low_28
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_28
NF20578_low_28
[»] chr4 (4 HSPs)
chr4 (1-367)||(1495013-1495371)
chr4 (1-354)||(1516584-1516957)
chr4 (1-313)||(1533137-1533445)
chr4 (266-348)||(48780120-48780202)
[»] chr8 (2 HSPs)
chr8 (266-352)||(12729166-12729253)
chr8 (270-352)||(28696338-28696421)
[»] chr5 (2 HSPs)
chr5 (270-352)||(36202895-36202978)
chr5 (265-354)||(29006244-29006336)
[»] chr3 (2 HSPs)
chr3 (270-348)||(50914667-50914746)
chr3 (266-333)||(33709598-33709667)
[»] chr7 (1 HSPs)
chr7 (269-352)||(12239877-12239961)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 1495371 - 1495013
Alignment:
Q  1 ggtaaataaaattttgaagccattgatttacttctagttataatggaagaaatagattgttgttgttgttgtgaagaattgaaagagtttgtcctcttcc 100  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  1495371 ggtaaataaaattttgcagcctttgatttacttctagttataatggaagaaatagattgttgt---------gaagaattgaaagagtttgtcctcttcc 1495281  T
Q  101 tcttcatattgaggacttcttagactttgttgtgaatagtatttctatgagattgaattctgtcactgctaaataatt-cttctaccagcgatgatctga 199  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  1495280 tcttcatattgaggacttcttagagtttgttgtgaatagtatttctatgagattgaattctgtgactgataaataatttcttctaccagcgatgatctga 1495181  T
Q  200 aattgaagtgaatcttatttatatatatttcacgttaataggacttgacactttttcggtattacattggaaagttgcaatggttaaaagagaccattta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1495180 aattgaagtgaatcttatttatatatatttcacgttaataggacttgacactttttcggtattacattggaaagttgcaatggttaaaagagaccattta 1495081  T
Q  300 gagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaaattctttcacaggtt 367  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  1495080 gagaaaaggtgtaaagctttacagttgaagcaatataaccattcatgaacaaaattctttcaaaggtt 1495013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 1516957 - 1516584
Alignment:
Q  1 ggtaaataaaattttgaagccattgatttacttctagttataatggaagaaatagattgttgttgttgttgtgaagaattgaaagagtttgtcctcttcc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  1516957 ggtaaataaaattttgcagccattgatttacttctagttataatggaagaaatcgattgttgttgttgttatgaagaattgaaaaagtttgtcctcttcc 1516858  T
Q  101 tcttcatattgaggacttcttagacttt----------gttg---tgaatagtatttctatgagattgaattctgtcactgctaaataattcttctacca 187  Q
    | |||||| ||||||||||||||  | |          ||||   ||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||    
T  1516857 ttttcatactgaggacttcttagggtgttccaattggagttgaattgaatcgtatttctatgagattgaagtctgccactgctaaatatttcttctacca 1516758  T
Q  188 gcgatgatctgaaattgaagtgaatcttatttatatatatttcacgttaataggacttgacactttttcggt-------attacattggaaagttgcaat 280  Q
    |||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||| ||       ||||||||||||| |||||||    
T  1516757 gcgatggtctgaaattgaagtaaatcttattaatatatatttcaagttaataggacatgacactttttctgtattttggattacattggaaaattgcaat 1516658  T
Q  281 ggttaaaagagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaaat 354  Q
    |||||||||||||  |||||||||||||||||  ||||||    ||| ||||||||||||||||||||||||||    
T  1516657 ggttaaaagagacattttagagaaaaggtgtagtgctttagaaatgacgcaatataaccattcatgaacaaaat 1516584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 1533445 - 1533137
Alignment:
Q  1 ggtaaataaaattttgaagccattgatttacttctagttataatggaagaaatagattgttgttgttgttgtgaagaattgaaagagtttgtcctcttcc 100  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||   |||||||||||  |||||||||||||||||||    
T  1533445 ggtaaataaaattttgcagccattgatttacttctacttataatggaagaaatcgattgttgttg---ttgtgaagaatcaaaagagtttgtcctcttcc 1533349  T
Q  101 tcttcatattgaggacttcttagact-------------ttgttgtgaatagtatttctatgagattgaattctgtcactgctaaataattcttctacca 187  Q
    | |||||| ||||||||||||||  |             |||  |||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||    
T  1533348 ttttcataatgaggacttcttagggtgttcctattggaattgaagtgaatcgtatttctatgagattgaagtctgccactgctaaatatttcttctacca 1533249  T
Q  188 gcgatgatctgaaattgaagtgaatcttatttatatatatttcacgttaataggacttgacactttttcggtattacattggaaagttgcaatggttaaa 287  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| |||||           | ||||   | ||||||||||||||||||||||||||||    
T  1533248 gcgatggtctaaaattgaagtgaatcttatttatatatatttcaagttaa-----------agtttt---ggattacattggaaagttgcaatggttaaa 1533163  T
Q  288 agagaccatttagagaaaaggtgtaa 313  Q
    |||||||  |||||||||||||||||    
T  1533162 agagacctattagagaaaaggtgtaa 1533137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 48780202 - 48780120
Alignment:
Q  266 ttggaaagttgcaatggttaaaagagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaa 348  Q
    |||||||||||||||| |||||  ||| | |||||||||||||| ||| | || ||  ||||||||||||||| |||||||||    
T  48780202 ttggaaagttgcaatgattaaacaagatcttttagagaaaaggtataatgtttgacaattgaagcaatataactattcatgaa 48780120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 352
Target Start/End: Original strand, 12729166 - 12729253
Alignment:
Q  266 ttggaaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa 352  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||| |||  ||  |||||||||||||||||||||||| ||||    
T  12729166 ttggaaagttgcaatggttaaatagagaccttttagagaaaaggtgtaatgctcgacaattgaagcaatataaccattcatgagcaaa 12729253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 28696421 - 28696338
Alignment:
Q  270 aaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa 352  Q
    ||||||||||||| |||| ||||| | ||||||||||| |||||| |||| ||  |||||||||| ||||||||||||||||||    
T  28696421 aaagttgcaatgggtaaatagagatcttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaaccattcatgaacaaa 28696338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 36202895 - 36202978
Alignment:
Q  270 aaagttgcaatggttaaaa-gagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa 352  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| |||| ||  ||||| |||| ||||||||||||||||||    
T  36202895 aaagttgcaatggttaaaaagagaccttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaaccattcatgaacaaa 36202978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 29006244 - 29006336
Alignment:
Q  265 attggaaagttgcaatggttaaaagagaccatttagagaaaag---gtgtaaagctttacggttgaagcaatataaccattcatgaacaaaat 354  Q
    |||| |||||||||||  |||||||||| | |||||| ||||    |||||| | |||||| |||||||||| ||||||||||||||||||||    
T  29006244 attgaaaagttgcaataattaaaagagatcttttagaaaaaaaaaagtgtaatgttttacgattgaagcaatgtaaccattcatgaacaaaat 29006336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 50914746 - 50914667
Alignment:
Q  270 aaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaa 348  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||| |||| ||  ||||||||||  |||||||||||||    
T  50914746 aaagttgcaatggttaaatagagaccttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaaccattcatgaa 50914667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 33709598 - 33709667
Alignment:
Q  266 ttggaaagttgcaatggttaaaagagaccatt--tagagaaaaggtgtaaagctttacggttgaagcaat 333  Q
    ||||||||||||||||||||||||||||| ||  || | ||||||||||| |||||||  ||||||||||    
T  33709598 ttggaaagttgcaatggttaaaagagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaat 33709667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 12239961 - 12239877
Alignment:
Q  269 gaaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa 352  Q
    ||||||||||||||||||| | ||||| ||||| ||||| |||||  |||| ||  |||| ||||| ||||||||||||||||||    
T  12239961 gaaagttgcaatggttaaagaaagaccttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattcatgaacaaa 12239877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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