View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20578_low_29 (Length: 373)
Name: NF20578_low_29
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 11155617 - 11155949
Alignment:
| Q |
16 |
catcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11155617 |
catcatcatcgatttggaagctgattttaatctgaggaacacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagt |
11155716 |
T |
|
| Q |
116 |
tattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||||||||||||||| |||||| | || |||||| | ||||||| |
|
|
| T |
11155717 |
tattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattc |
11155816 |
T |
|
| Q |
216 |
cttgggattattatgtccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaact |
315 |
Q |
| |
|
|| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| |
|
|
| T |
11155817 |
ctagggattattgtgttcataatccccccatgagtctccaatccaagggacaaaggaatgacctccgacaattgtaaatct------ttctcactacact |
11155910 |
T |
|
| Q |
316 |
caccactcaatatagaagcatggacagcagcgccatatg |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11155911 |
caccactcaatatagaagcatggacagcagcgccatatg |
11155949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 11196064 - 11196402
Alignment:
| Q |
16 |
catcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagc |
115 |
Q |
| |
|
|||| |||||||||||||||| |||| | ||||||||| ||||||||| ||| |||||||||||||| |||||| |||| ||||||||||| ||||||| |
|
|
| T |
11196064 |
catcgtcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgtccctagt |
11196163 |
T |
|
| Q |
116 |
tattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattc |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |||||||||| | ||||||||||||||||| |||||| | || |||||| | ||||||| |
|
|
| T |
11196164 |
tattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattc |
11196263 |
T |
|
| Q |
216 |
cttgggattattatgtccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaact |
315 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196264 |
ctagggattattatttccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaact |
11196363 |
T |
|
| Q |
316 |
caccactcaatatagaagcatggacagcagcgccatatg |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196364 |
caccactcaatatagaagcatggacagcagcgccatatg |
11196402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 103 - 354
Target Start/End: Original strand, 11160566 - 11160816
Alignment:
| Q |
103 |
tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg |
202 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||||||||||||||| |||||| | || ||| |
|
|
| T |
11160566 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
11160665 |
T |
|
| Q |
203 |
aatgtgggtattccttgggattattatgtccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaacc |
302 |
Q |
| |
|
||| | ||||||||| ||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11160666 |
aattttggtattcctagggattattgtgttcataatccccccc-gagtctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaacc |
11160764 |
T |
|
| Q |
303 |
ttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatg |
354 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11160765 |
ttctcactacgctcaccactcaatatagaagcatggacagcagcgccatatg |
11160816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 103 - 354
Target Start/End: Original strand, 11199147 - 11199392
Alignment:
| Q |
103 |
tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg |
202 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||| | ||||||||||||||||| |||||| | || ||| |
|
|
| T |
11199147 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
11199246 |
T |
|
| Q |
203 |
aatgtgggtattccttgggattattatgtccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaacc |
302 |
Q |
| |
|
||| | ||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11199247 |
aattttggtattcctagggattattgtgttcataatccccccatgagtctccaatccaagggacaaaggaatgacctccgacaattgtaaatct------ |
11199340 |
T |
|
| Q |
303 |
ttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatg |
354 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11199341 |
ttctcactacactcaccactcaatatagaagcatggacagcagcgccatatg |
11199392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 56 - 346
Target Start/End: Original strand, 11132375 - 11132665
Alignment:
| Q |
56 |
acctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaattaaaatattg |
155 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||| |||||| || ||||| || ||||||||||| ||||||||| |
|
|
| T |
11132375 |
acctgccggagctgggggaatttccaaaacaaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattg |
11132474 |
T |
|
| Q |
156 |
atttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccataatccccccatgtttctcca |
255 |
Q |
| |
|
||||||| | || |||||| |||||||| | ||||||| ||||||||| ||||||||| || || ||| | ||| || |||||||||||||||| |
|
|
| T |
11132475 |
gtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaattaaggtattcctaggaatcattgttgacatgattcccccatgtttctcca |
11132574 |
T |
|
| Q |
256 |
atccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagc |
346 |
Q |
| |
|
|||||||||| ||||||||||||||| | || | ||| | |||||| |||||||| |||||| ||||||| || |||||||||||||| |
|
|
| T |
11132575 |
atccaagggataaaggaatgacctccctcgatcgcaaaacgctaaccttttcactaaaatcaccattcaatattgatgcatggacagcagc |
11132665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 11242016 - 11241912
Alignment:
| Q |
250 |
tctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgcc |
349 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11242016 |
tctccaatccaagggacaaagaaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacaacagcgcc |
11241917 |
T |
|
| Q |
350 |
atatg |
354 |
Q |
| |
|
||||| |
|
|
| T |
11241916 |
atatg |
11241912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 11275555 - 11275618
Alignment:
| Q |
291 |
aaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatg |
354 |
Q |
| |
|
|||||||||| ||| |||| || |||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
11275555 |
aaatcttgaaacttttcacaaagctcaccactcaatataaaagcatggatagcagcgccatatg |
11275618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 354
Target Start/End: Original strand, 11208959 - 11209056
Alignment:
| Q |
257 |
tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatg |
354 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| |||||||||| ||| |||| || ||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
11208959 |
tccaagggacaaaggattgacttccctcaatgtcaaatcttgaaacttttcacaaatctcaccacttgctataaaagcatggacagcagcgccatatg |
11209056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 11319849 - 11319803
Alignment:
| Q |
291 |
aaatcttgaaccttctcactaaactcaccactcaatatagaagcatg |
337 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
11319849 |
aaatcttgaaacttttcacaaaactcaccactcaatatagaagcatg |
11319803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 354
Target Start/End: Original strand, 11170137 - 11170234
Alignment:
| Q |
257 |
tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatg |
354 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| |||||||||| ||| |||| || | ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
11170137 |
tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcgcaccacttgctataaaagcatggacagcagcgccatatg |
11170234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 11169976 - 11170025
Alignment:
| Q |
96 |
agcaagttgttttccctagctattttcctctcaccttcataaacatgaat |
145 |
Q |
| |
|
||||||||||| ||| ||| ||||| ||||||||| |||||||||||||| |
|
|
| T |
11169976 |
agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat |
11170025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 12527925 - 12527978
Alignment:
| Q |
93 |
ccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaatt |
146 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||| || ||||||||||||||| |
|
|
| T |
12527925 |
ccaagcaagttgttttcgctagctatcattctctcgccctcataaacatgaatt |
12527978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University