View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_3 (Length: 767)

Name: NF20578_low_3
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_3
NF20578_low_3
[»] chr6 (13 HSPs)
chr6 (22-435)||(27924255-27924684)
chr6 (467-748)||(27924742-27925030)
chr6 (34-266)||(28005391-28005620)
chr6 (448-717)||(144476-144748)
chr6 (448-717)||(152497-152769)
chr6 (432-618)||(28005678-28005862)
chr6 (128-180)||(26559160-26559212)
chr6 (128-183)||(27894130-27894185)
chr6 (70-184)||(2460068-2460182)
chr6 (70-124)||(34939552-34939606)
chr6 (70-111)||(1019600-1019641)
chr6 (101-182)||(20861617-20861698)
chr6 (147-184)||(35070571-35070608)
[»] chr2 (6 HSPs)
chr2 (432-748)||(24326644-24326970)
chr2 (128-184)||(15370240-15370296)
chr2 (70-122)||(11063527-11063579)
chr2 (72-182)||(787373-787483)
chr2 (70-124)||(33525944-33525998)
chr2 (128-178)||(33981220-33981270)
[»] chr7 (5 HSPs)
chr7 (70-184)||(46082075-46082189)
chr7 (70-182)||(33894666-33894778)
chr7 (70-167)||(36598290-36598387)
chr7 (144-187)||(46609002-46609045)
chr7 (70-111)||(47134747-47134788)
[»] chr8 (10 HSPs)
chr8 (70-186)||(11569372-11569488)
chr8 (70-167)||(6950361-6950458)
chr8 (70-162)||(13000363-13000455)
chr8 (70-184)||(30191058-30191172)
chr8 (128-184)||(44236740-44236796)
chr8 (70-137)||(5069736-5069803)
chr8 (143-182)||(9130238-9130277)
chr8 (72-182)||(2487927-2488037)
chr8 (129-179)||(8629211-8629261)
chr8 (70-184)||(9700040-9700154)
[»] chr3 (8 HSPs)
chr3 (70-176)||(22667443-22667548)
chr3 (70-176)||(22724082-22724187)
chr3 (89-182)||(50211793-50211886)
chr3 (114-176)||(27795938-27796000)
chr3 (70-124)||(36200135-36200189)
chr3 (64-163)||(38971291-38971390)
chr3 (69-111)||(54180770-54180812)
chr3 (143-188)||(38902177-38902222)
[»] chr5 (7 HSPs)
chr5 (114-185)||(25720333-25720404)
chr5 (141-184)||(42034170-42034213)
chr5 (101-166)||(41016248-41016313)
chr5 (70-149)||(13194840-13194919)
chr5 (70-132)||(18704006-18704067)
chr5 (70-167)||(10303835-10303932)
chr5 (70-111)||(30269723-30269764)
[»] chr4 (8 HSPs)
chr4 (70-184)||(27123269-27123383)
chr4 (64-180)||(19304959-19305075)
chr4 (107-187)||(46187823-46187903)
chr4 (70-167)||(6428057-6428154)
chr4 (143-184)||(18815135-18815176)
chr4 (71-164)||(51560226-51560319)
chr4 (128-177)||(52172822-52172871)
chr4 (143-184)||(54426155-54426196)
[»] chr1 (6 HSPs)
chr1 (70-164)||(27140517-27140611)
chr1 (87-167)||(5591901-5591980)
chr1 (80-184)||(32515358-32515462)
chr1 (66-148)||(4868435-4868516)
chr1 (80-180)||(4549462-4549563)
chr1 (69-110)||(27963361-27963402)


Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 22 - 435
Target Start/End: Complemental strand, 27924684 - 27924255
Alignment:
Q  22 tttaactaccaacctagccttgtatttatcctagagagact--gtaatgtaaataagctaaaaacaacttatggacgtgttataagatgtttacataaac 119  Q
    ||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27924684 tttaactaccagcctagccttgtatttatcctagagagactatgtaatgtaaataagctaaaaataacttatggacgtgttataagatgtttacataaac 27924585  T
Q  120 tctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaaacaggtcctcctaggtttaaattgaagaggggaattcagt 219  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27924584 tctcttataaagtcttataaatgcttatgccagtaggtaagctcaaatgagctaatccaaacaggtcctcctaggtttaaattgaagaggggaattcagt 27924485  T
Q  220 tgttagaggtaggagaacactataatccaaactattacggacttaaacaagggtgaccttttttacatggtagtgtgaaaggcttttttcatactctttt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27924484 tgttagaggtaggagaacactataatccaaactattacggacttaaacaagggtgacctttttaacatggtagtgtgaaaggcttttttcatactctttt 27924385  T
Q  320 gttcatttgccgcttaccattttttcatactcttctgttcatttgcactattgcagtatcgttgtgttagtga--------------tcttatcaaccag 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||    
T  27924384 gttcatttgccgcttaccattttttcatactcttctgttcatttgcactattgcagtatcgttgtgttagtgagcatgtcagtgatctcttatcaaccag 27924285  T
Q  406 gttaactttcatgtgtagtatctctgtgct 435  Q
    ||||||||||||||||||||||||||||||    
T  27924284 gttaactttcatgtgtagtatctctgtgct 27924255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 467 - 748
Target Start/End: Original strand, 27924742 - 27925030
Alignment:
Q  467 ttatttcagccgtagctcaaaatttgtggtctatttatcaatttaatgttaagtcggcttttttacatggtgaattgcaagatgtctacgctgagcgacc 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  27924742 ttatttcagccgtagctcaaaatttgtggtctatttatcaatttaatgttaagtcggcttttttacatggtgaattgcaagacgtctacgttgagcgacc 27924841  T
Q  567 attggaatatgagacgcaagggaatgagaagaacgtctacaagttaaagaaggcactatatagactaaaacaagcaccacgagcttggtatagtcgaata 666  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  27924842 attgggatatgagacgcaagggaatgagaagaatgtctacaagttaaagaagacactatatagactaaaacaagcaccacgagtttggtatagtcgaata 27924941  T
Q  667 gagtcttatttcataagagcgggcattcatatatgtccatatgagcacacaagttt-------cttgcagatggtgagaaaatgcttgt 748  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  27924942 gagtcttatttcataagagcgggcattcatatatgtccatatgagcacacaagtttcactaagcttgcagatggtgagaaaatgcttgt 27925030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 34 - 266
Target Start/End: Complemental strand, 28005620 - 28005391
Alignment:
Q  34 cctagccttgtatttatcctagagagactgtaatgtaaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtc 133  Q
    |||||||||||||||||||||||| || |   ||||||||||||||||||  ||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  28005620 cctagccttgtatttatcctagagtgatt---atgtaaataagctaaaaagcacttatgtacgtgttataagctgtttacataaactctcttaaacagtc 28005524  T
Q  134 ttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaaacaggtcctcctaggtttaaattgaagaggggaattcagttgttagaggtagga 233  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28005523 ttacaagtgcttatgccagtaggtaagctcaaatgagctaatctaaacaggtcctccgaggtttaaattgaagaggggaattcagttgttagaggtagga 28005424  T
Q  234 gaacactataatccaaactattacggacttaaa 266  Q
     |||||||||||||||||||||| |||||||||    
T  28005423 aaacactataatccaaactattaaggacttaaa 28005391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 448 - 717
Target Start/End: Original strand, 144476 - 144748
Alignment:
Q  448 cttgacacacttatattggttatttcagccgtagctcaaaatttgtggtctatttatcaatttaatgttaagtcggcttttttacatggtgaattgcaag 547  Q
    ||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  144476 cttgacacaattagattggttatttcagtcgcagctcaaaatttgtggtctatttatcaatttgatgttaagtcggcttttttacatggtgaattacaag 144575  T
Q  548 a---tgtctacgctgagcgaccattggaatatgagacgcaagggaatgagaagaacgtctacaagttaaagaaggcactatatagactaaaacaagcacc 644  Q
    |   |||||| | |||||  ||||||| |||||| | |||||||||||||||||| || ||||||||||||||||| |||||  ||||||||||||||||    
T  144576 aagatgtctatgttgagcagccattgggatatgaaaggcaagggaatgagaagaaagtttacaagttaaagaaggcgctatacggactaaaacaagcacc 144675  T
Q  645 acgagcttggtatagtcgaatagagtcttatttcataagagcgggcattcatatatgtccatatgagcacaca 717  Q
    |||||||||||||||||| ||||||||||||||||| ||||  ||| |||||| |||||||||||||||||||    
T  144676 acgagcttggtatagtcgtatagagtcttatttcattagagatggctttcataaatgtccatatgagcacaca 144748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 448 - 717
Target Start/End: Original strand, 152497 - 152769
Alignment:
Q  448 cttgacacacttatattggttatttcagccgtagctcaaaatttgtggtctatttatcaatttaatgttaagtcggcttttttacatggtgaattgcaag 547  Q
    ||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  152497 cttgacacaattagattggttatttcagtcgcagctcaaaatttgtggtctatttatcaatttgatgttaagtcggcttttttacatggtgaattacaag 152596  T
Q  548 a---tgtctacgctgagcgaccattggaatatgagacgcaagggaatgagaagaacgtctacaagttaaagaaggcactatatagactaaaacaagcacc 644  Q
    |   |||||| | |||||  ||||||| |||||| | |||||||||||||||||| || ||||||||||||||||| |||||  ||||||||||||||||    
T  152597 aagatgtctatgttgagcagccattgggatatgaaaggcaagggaatgagaagaaagtttacaagttaaagaaggcgctatacggactaaaacaagcacc 152696  T
Q  645 acgagcttggtatagtcgaatagagtcttatttcataagagcgggcattcatatatgtccatatgagcacaca 717  Q
    |||||||||||||||||| ||||||||||||||||| ||||  ||| |||||| |||||||||||||||||||    
T  152697 acgagcttggtatagtcgtatagagtcttatttcattagagatggctttcataaatgtccatatgagcacaca 152769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 432 - 618
Target Start/End: Original strand, 28005678 - 28005862
Alignment:
Q  432 tgctccggtggctatacttgacacacttatattggttatttcagccgtagctcaaaatttgtggtctatttatcaatttaatgttaagtcggctttttta 531  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  28005678 tgctccggtggctatacttgacacaattatattggttatttcagccgcaactcaaaatttgtagtctatttatcaatttaatgttaagttagctttttta 28005777  T
Q  532 catggtgaattgcaagatgtctacgctgagcgaccattggaatatgagacgcaagggaatgagaagaacgtctacaagttaaagaag 618  Q
    |||||||| || ||||||||||| | ||||| ||||||||||||||||| |||||||  ||||||||  || |||||||||||||||    
T  28005778 catggtgactttcaagatgtctatgttgagcaaccattggaatatgagaagcaaggg--tgagaagatagtttacaagttaaagaag 28005862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 26559212 - 26559160
Alignment:
Q  128 acagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaaa 180  Q
    ||||||| |||||||||||||||||||||||| ||||||| || |||||||||    
T  26559212 acagtctcacaaatgcttatgccagtaggtaaactcaaataagttaatccaaa 26559160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 27894130 - 27894185
Alignment:
Q  128 acagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaaacag 183  Q
    ||||||| |||| | |||||| | ||||||||||||||||||||||||||||||||    
T  27894130 acagtctcacaagtacttatgtccgtaggtaagctcaaatgagctaatccaaacag 27894185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 2460182 - 2460068
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatga 169  Q
    ||||||| | |||||||||||  ||| ||| ||||| ||||| ||||| |||||| | ||||||| |||| | ||||||| |||   ||||||||||| |    
T  2460182 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataa 2460083  T
Q  170 gctaatccaaacagg 184  Q
    | |||||||||||||    
T  2460082 gttaatccaaacagg 2460068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 34939552 - 34939606
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctct 124  Q
    ||||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||||    
T  34939552 aaataagctgaaaacaacttacggacgtgtcataagttgtttccataagctctct 34939606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 1019641 - 1019600
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgttt 111  Q
    |||||||||||||||||||||| ||| ||||||||| |||||    
T  1019641 aaataagctaaaaacaacttatagacatgttataagttgttt 1019600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 20861698 - 20861617
Alignment:
Q  101 ataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaaaca 182  Q
    ||||||||||| ||||| |||||  | | |||||  || || ||||||||||||||||||||||||| ||  ||||||||||    
T  20861698 ataagatgttttcataagctctcccaaaaagtctcgcatatacttatgccagtaggtaagctcaaataagacaatccaaaca 20861617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 35070608 - 35070571
Alignment:
Q  147 tgccagtaggtaagctcaaatgagctaatccaaacagg 184  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  35070608 tgccagtaggtaagctcaaataagccaatccaaacagg 35070571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 2e-91; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 432 - 748
Target Start/End: Original strand, 24326644 - 24326970
Alignment:
Q  432 tgctccggtggctatacttgacacacttatattggttatttcagccgtagctcaaaatttgtggtctatttatcaatttaatgttaagtcggctttttta 531  Q
    |||||||||||||   ||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  24326644 tgctccggtggctcgccttgacacaattagattggttatttcagtcgcagctcaaaatttgtggtctatttatcaatttgatgttaagtcagctttttta 24326743  T
Q  532 catggtgaattgcaaga---tgtctacgctgagcgaccattggaatatgagacgcaagggaatgagaagaacgtctacaagttaaagaaggcactatata 628  Q
    ||||||||||| |||||   |||||| | ||||| |||||||| |||||||| |||||||||||||||||| || |||||||||||||||||  ||||      
T  24326744 catggtgaattacaagaagatgtctatgttgagcaaccattgggatatgagaggcaagggaatgagaagaaagtttacaagttaaagaaggcgttatacg 24326843  T
Q  629 gactaaaacaagcaccacgagcttggtatagtcgaatagagtcttatttcataagagcgggcattcatatatgtccatatgagcacacaagttt------ 722  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||| | |||||||||||||||||||  |||          
T  24326844 gactaaaacaagcaccacgagcttggtatagtcgtatagagtcttatttcattagagctggctttcaaaaatgtccatatgagcacacacttttcattaa 24326943  T
Q  723 -cttgcagatggtgagaaaatgcttgt 748  Q
     ||||||||||||||||||||||||||    
T  24326944 gcttgcagatggtgagaaaatgcttgt 24326970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 15370296 - 15370240
Alignment:
Q  128 acagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaaacagg 184  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||  ||||||||||||    
T  15370296 acagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaacagg 15370240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 11063527 - 11063579
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactct 122  Q
    |||||||||||||||||||||||||| ||| |||| |||||| ||||| ||||    
T  11063527 aaataagctaaaaacaacttatggacatgtcataatatgtttccataagctct 11063579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 787373 - 787483
Alignment:
Q  72 ataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatgagc 171  Q
    ||||||| |||||| ||||||||| ||| ||||| ||||| |||||  ||||  | ||||| | |||| ||||||||||||||| || |||| ||| | |    
T  787373 ataagctgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagatatgctcgaataatc 787472  T
Q  172 taatccaaaca 182  Q
     ||||||||||    
T  787473 caatccaaaca 787483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 33525998 - 33525944
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctct 124  Q
    ||||||||| ||| |||||||||||| ||||||||| ||||| ||| ||||||||    
T  33525998 aaataagctgaaaccaacttatggacatgttataagttgtttccatgaactctct 33525944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 33981220 - 33981270
Alignment:
Q  128 acagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatcca 178  Q
    ||||||| |||| |||||| || ||||||||||||||||| ||||||||||    
T  33981220 acagtctcacaagtgcttaagctagtaggtaagctcaaataagctaatcca 33981270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 46082075 - 46082189
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatga 169  Q
    ||||||||| |||||||||||||| | ||| ||||| ||||| ||||| ||||| |  ||||||| | || || ||||||||||||||||| |||||| |    
T  46082075 aaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctcattaacagtctcaaaattgtttatgccagtaggtaagatcaaatta 46082174  T
Q  170 gctaatccaaacagg 184  Q
    || ||||||||||||    
T  46082175 gccaatccaaacagg 46082189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 33894666 - 33894778
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatga 169  Q
    ||||||||| |||||||||||||||| ||| ||| | ||||| ||||| |||||  | ||||||| |||| |||||||| || | | ||||||||||| |    
T  33894666 aaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagctcaaataa 33894765  T
Q  170 gctaatccaaaca 182  Q
    |||||||||||||    
T  33894766 gctaatccaaaca 33894778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 36598387 - 36598290
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaat 167  Q
    ||||||||| |||||| |||||| || ||| ||||||||||| ||||| |||||| | ||| ||| |||| |||||||| |||||| |||| ||||||    
T  36598387 aaataagctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgcttatgtcagtagttaagttcaaat 36598290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 46609045 - 46609002
Alignment:
Q  144 ttatgccagtaggtaagctcaaatgagctaatccaaacaggtcc 187  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||    
T  46609045 ttatgtcagtaggtaagttcaaataagctaatccaaacaggtcc 46609002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 47134788 - 47134747
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgttt 111  Q
    ||||||||| |||||||||||||||||||| ||||| |||||    
T  47134788 aaataagctgaaaacaacttatggacgtgtcataagttgttt 47134747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 11569488 - 11569372
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatga 169  Q
    ||||||||| ||||||||||||| || ||| ||||| ||||| ||||| |||||||| ||||||| |||| || ||||||||| || |||||||  || |    
T  11569488 aaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtctcacaagtggttatgccagcagataagctctgataa 11569389  T
Q  170 gctaatccaaacaggtc 186  Q
    || |||| |||||||||    
T  11569388 gccaatcaaaacaggtc 11569372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 6950361 - 6950458
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaat 167  Q
    ||||||||| |||||||||||| ||| ||| ||| | ||||||||||| |||||  | ||| ||| ||||||| |||||||||||| ||| |||||||    
T  6950361 aaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataaactcaaat 6950458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 13000455 - 13000363
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagct 162  Q
    ||||||||| |||||||||| ||||| ||| ||||| ||||  ||||||||||   | | ||||| |||| ||||||||||||||||||||||    
T  13000455 aaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgcttatgccagtaggtaagct 13000363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 30191172 - 30191058
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatga 169  Q
    ||||||||| ||||||| || || || ||| ||||| ||||| ||||| |||||  | ||||||| |||| ||||||||||| ||| ||| ||||||| |    
T  30191172 aaataagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataaactcaaataa 30191073  T
Q  170 gctaatccaaacagg 184  Q
    ||| || ||||||||    
T  30191072 gcttatgcaaacagg 30191058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 44236796 - 44236740
Alignment:
Q  128 acagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaaacagg 184  Q
    ||||||| |||| ||||||||||||||| ||| ||||||| || |||||||||||||    
T  44236796 acagtctcacaagtgcttatgccagtagataaactcaaataaggtaatccaaacagg 44236740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 5069736 - 5069803
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttac 137  Q
    ||||||||| ||||  ||||||| || ||||||||||||||| ||||| |||||| | ||||||||||    
T  5069736 aaataagctgaaaatgacttatgaacatgttataagatgtttccataagctctctcaaacagtcttac 5069803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 9130277 - 9130238
Alignment:
Q  143 cttatgccagtaggtaagctcaaatgagctaatccaaaca 182  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  9130277 cttatgccagtagataagctcaaataagctaatccaaaca 9130238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 2488037 - 2487927
Alignment:
Q  72 ataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatgagc 171  Q
    ||||||||||||||  || || || ||||||||| ||||| |||||  ||||  | ||||||| |||| |||||||| |||||| | | ||||||| |||    
T  2488037 ataagctaaaaacagtttttgaacatgttataagttgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagc 2487938  T
Q  172 taatccaaaca 182  Q
     ||||||||||    
T  2487937 caatccaaaca 2487927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 8629211 - 8629261
Alignment:
Q  129 cagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaa 179  Q
    |||||| |||| |||||||||||||||||||||| |||| ||| |||||||    
T  8629211 cagtctcacaagtgcttatgccagtaggtaagcttaaataagcaaatccaa 8629261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 9700040 - 9700154
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatga 169  Q
    ||||||| | |||||| ||||||||| ||| ||||  || || || || |||||| | | ||||| |||| || |||||| ||||| ||||||||||| |    
T  9700040 aaataaggtgaaaacagcttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataa 9700139  T
Q  170 gctaatccaaacagg 184  Q
    | |||||||||||||    
T  9700140 gttaatccaaacagg 9700154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 22667443 - 22667548
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatga 169  Q
    |||||||||||||| ||||| || |  ||||||| | ||||| |||||||||||| | ||||||| |||| |||||||| |||||| ||||||||||| |    
T  22667443 aaataagctaaaaataacttctgaaa-tgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataa 22667541  T
Q  170 gctaatc 176  Q
    || ||||    
T  22667542 gccaatc 22667548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 22724082 - 22724187
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatga 169  Q
    |||||||||||||| ||||| || |  ||||||| | ||||| |||||||||||| | ||||||| |||| |||||||| |||||| ||||||||||| |    
T  22724082 aaataagctaaaaataacttctgaaa-tgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataa 22724180  T
Q  170 gctaatc 176  Q
    || ||||    
T  22724181 gccaatc 22724187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 50211793 - 50211886
Alignment:
Q  89 tatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaaaca 182  Q
    |||||| |||||||||| ||||| |||||  ||||| | |||||||||||| ||||||||  ||||| |||||| |||| || |||||||||||    
T  50211793 tatggatgtgttataagttgttttcataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataagttaatccaaaca 50211886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 27796000 - 27795938
Alignment:
Q  114 ataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatc 176  Q
    |||| |||||||| ||||| | |||| ||||||||||||||| ||||||||||| ||||||||    
T  27796000 ataagctctcttaaacagtttcacaagtgcttatgccagtagataagctcaaataagctaatc 27795938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 36200135 - 36200189
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctct 124  Q
    ||||||||| |||||||||||||||| ||| ||||| |||||||| |||||||||    
T  36200135 aaataagctgaaaacaacttatggacatgtcataagttgtttacaaaaactctct 36200189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 38971291 - 38971390
Alignment:
Q  64 taatgtaaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctc 163  Q
    |||| |||||||| | |||||| |||| | || ||||||||  ||||| || ||||| ||| | ||||||| |||| ||||||||||||||| |||||||    
T  38971291 taatataaataagttgaaaacagcttacgaacatgttataaactgttttcaaaaactatctcagacagtctcacaagtgcttatgccagtagataagctc 38971390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 54180812 - 54180770
Alignment:
Q  69 taaataagctaaaaacaacttatggacgtgttataagatgttt 111  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||    
T  54180812 taaataagctaaaaacaacttatggacatgtcataagctgttt 54180770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 38902177 - 38902222
Alignment:
Q  143 cttatgccagtaggtaagctcaaatgagctaatccaaacaggtcct 188  Q
    ||||||||||||| ||||||||||||||  ||| ||||||||||||    
T  38902177 cttatgccagtagataagctcaaatgaggcaattcaaacaggtcct 38902222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 25720404 - 25720333
Alignment:
Q  114 ataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaaacaggt 185  Q
    |||| |||||| | ||||||| |||| ||||||||||||||| ||| ||||||| ||||||| |||||||||    
T  25720404 ataagctctctcagacagtctcacaagtgcttatgccagtagataacctcaaataagctaattcaaacaggt 25720333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 42034170 - 42034213
Alignment:
Q  141 tgcttatgccagtaggtaagctcaaatgagctaatccaaacagg 184  Q
    |||||||| |||||||||||||||||| ||||||||||||||||    
T  42034170 tgcttatgtcagtaggtaagctcaaataagctaatccaaacagg 42034213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 41016248 - 41016313
Alignment:
Q  101 ataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaa 166  Q
    ||||| ||||| ||||||||||||||||||||| ||||| ||||||||| | ||| |||| |||||    
T  41016248 ataagttgtttccataaactctcttatacagtcctacaagtgcttatgctaatagataagttcaaa 41016313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 13194840 - 13194919
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgc 149  Q
    |||||||||||||||||| ||||||| ||||||||| | ||| || || |||| | | ||||||||||| || |||||||    
T  13194840 aaataagctaaaaacaacatatggacatgttataagcttttttcacaagctctgtcaaacagtcttacacatccttatgc 13194919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 18704067 - 18704006
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagt 132  Q
    ||||||||| |||||||||||| ||| ||||||||| ||||| ||||| |||||||| |||||    
T  18704067 aaataagctgaaaacaacttatagacatgttataagttgttt-cataagctctcttaaacagt 18704006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 10303835 - 10303932
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaat 167  Q
    ||||||||| | |||||||||||||| ||| || |||||||   |||| |||||| | | | ||| ||||||||||||| | |||| |||||||||||    
T  10303835 aaataagctgacaacaacttatggacatgtcattagatgttcggataagctctctcaaataatctcacaaatgcttatgtccgtagataagctcaaat 10303932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 30269764 - 30269723
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgttt 111  Q
    |||||||||||||||||||||||| | ||||||||| |||||    
T  30269764 aaataagctaaaaacaacttatgggcatgttataagttgttt 30269723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 27123383 - 27123269
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatga 169  Q
    ||||||| | |||||||||||  ||| ||| ||||| ||||| ||||| |||||| | ||||||| |||| | ||||||| |||   ||||||||||| |    
T  27123383 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataa 27123284  T
Q  170 gctaatccaaacagg 184  Q
    | |||||||||||||    
T  27123283 gttaatccaaacagg 27123269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 19304959 - 19305075
Alignment:
Q  64 taatgtaaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctc 163  Q
    ||||| ||| ||||| |||||||||||||||| ||| ||||| ||||| || ||| ||||  | ||| ||| ||||||||||||| || ||| ||| |||    
T  19304959 taatggaaacaagctgaaaacaacttatggacatgtcataagctgtttccacaaattctcccacacaatctcacaaatgcttatgtcaatagataatctc 19305058  T
Q  164 aaatgagctaatccaaa 180  Q
    |||| ||  ||||||||    
T  19305059 aaataagtcaatccaaa 19305075  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 46187903 - 46187823
Alignment:
Q  107 tgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaaacaggtcc 187  Q
    ||||| ||||||| |||||| ||||||| | || || |||||||||||| ||||||||||| || | ||||||||| ||||    
T  46187903 tgtttccataaaccctcttaaacagtctcataagtgtttatgccagtagataagctcaaataagatcatccaaacatgtcc 46187823  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 6428057 - 6428154
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaat 167  Q
    ||||| ||| ||| |||||||||||| ||| ||||| ||||| ||||| |||||| | || |||| |||| ||||||| ||| ||  |||||||||||    
T  6428057 aaatatgcttaaatcaacttatggacatgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaat 6428154  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 18815135 - 18815176
Alignment:
Q  143 cttatgccagtaggtaagctcaaatgagctaatccaaacagg 184  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||    
T  18815135 cttatgctagtaggtaagctcaaataagccaatccaaacagg 18815176  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 51560319 - 51560226
Alignment:
Q  71 aataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctca 164  Q
    |||||||||||||||| ||||| || ||| ||||| ||||| |||||  ||||  | | ||||| | || ||||||||||||||| ||||||||    
T  51560319 aataagctaaaaacaagttatgaacatgtgataaggtgttttcataaggtctcccaaagagtctcataagtgcttatgccagtagataagctca 51560226  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 52172822 - 52172871
Alignment:
Q  128 acagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatcc 177  Q
    ||||||| |||||| |||||||||||| |||||||||||| ||| |||||    
T  52172822 acagtctcacaaatacttatgccagtatgtaagctcaaataagccaatcc 52172871  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 54426155 - 54426196
Alignment:
Q  143 cttatgccagtaggtaagctcaaatgagctaatccaaacagg 184  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||    
T  54426155 cttatgccagtagataagctcaaataagccaatccaaacagg 54426196  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 27140517 - 27140611
Alignment:
Q  70 aaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctca 164  Q
    ||||||||| |||||||||||||||| ||| ||||| ||||| | |||||||||| | | || ||||||| || ||||| || ||| ||||||||    
T  27140517 aaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactctctcaaagagacttacaattgtttatgtcaatagataagctca 27140611  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 5591980 - 5591901
Alignment:
Q  87 cttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaat 167  Q
    |||||| |||||| ||||| ||||| ||||| |||||| | ||||||| ||| |||||||| ||||||| |||||||||||    
T  5591980 cttatgcacgtgtcataagctgttttcataagctctctcaaacagtct-acacatgcttataccagtagataagctcaaat 5591901  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 32515462 - 32515358
Alignment:
Q  80 aaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatccaa 179  Q
    |||||||||||| ||| ||| ||| | ||||| ||||| |||||  | ||||||| |||| ||||||||  ||||| ||| |||||||  ||||||||||    
T  32515462 aaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgctaatccaa 32515363  T
Q  180 acagg 184  Q
    |||||    
T  32515362 acagg 32515358  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 4868435 - 4868516
Alignment:
Q  66 atgtaaataagctaaaaacaacttatggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatg 148  Q
    ||||||||||| | |||||||||||| ||| ||| ||||| ||||| |||||||||||| | ||||||| |||| ||| ||||    
T  4868435 atgtaaataagttgaaaacaacttattgacatgtcataagttgttt-cataaactctctcaaacagtctcacaagtgcctatg 4868516  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 4549563 - 4549462
Alignment:
Q  80 aaaacaactt-atggacgtgttataagatgtttacataaactctcttatacagtcttacaaatgcttatgccagtaggtaagctcaaatgagctaatcca 178  Q
    |||||||||| || ||| ||| ||||| |||||  |||| |||||  | ||||||| | |||||||||||||||||| ||| ||||||| ||| ||||||    
T  4549563 aaaacaactttatagacatgtcataagttgtttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatcca 4549464  T
Q  179 aa 180  Q
    ||    
T  4549463 aa 4549462  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 27963402 - 27963361
Alignment:
Q  69 taaataagctaaaaacaacttatggacgtgttataagatgtt 110  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||    
T  27963402 taaataagctaaaaacaacttatggacatgtcataagctgtt 27963361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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