View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_35 (Length: 347)

Name: NF20578_low_35
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_35
NF20578_low_35
[»] chr6 (5 HSPs)
chr6 (15-330)||(2741975-2742290)
chr6 (155-330)||(286472-286647)
chr6 (54-114)||(286676-286736)
chr6 (55-104)||(25319617-25319666)
chr6 (55-104)||(26149310-26149359)
[»] chr2 (3 HSPs)
chr2 (41-107)||(16920688-16920754)
chr2 (55-88)||(7435573-7435606)
chr2 (55-87)||(7429322-7429354)
[»] chr5 (6 HSPs)
chr5 (55-96)||(16487077-16487118)
chr5 (55-96)||(32642643-32642684)
chr5 (55-96)||(37512601-37512642)
chr5 (55-104)||(42406390-42406439)
chr5 (55-95)||(32805173-32805213)
chr5 (55-99)||(42834878-42834922)
[»] chr3 (1 HSPs)
chr3 (55-101)||(9704925-9704971)
[»] scaffold0054 (1 HSPs)
scaffold0054 (55-104)||(40135-40184)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 2742290 - 2741975
Alignment:
Q  15 agatgaacaatgggaggaagattcatatgttgaccccaggtgggagatatatagtctaagaagcaattcttggagaaaacttaatattgaaattccttgt 114  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2742290 agatgagcaatgggaggaagattcatatgtcgaccccaggtgggagatatatagtctaagaagcaattcttggagaaaacttaatattgaaattccttgt 2742191  T
Q  115 tgcaatggtgaaaatagtacaaatgaaaaagtgtatgtggatggaatgtgtcactggttgagtttaactgatgaaagtaattgtcatagtgttgagccac 214  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2742190 tgcaatggtgaaaatagtccaaatgaaaaagtgtatgtggatggaatgtgtcactggttgagtttaactgatgaaagtaattgtcatagtgttgagccac 2742091  T
Q  215 acatggtgtcatttgacttatacaatgaggtattccttacaacacctttgctctcaggcgtggtcgaactttatgatagtttgcatttgacgttgttaaa 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  2742090 acatggtgtcatttgacttatacaatgaggtattccttacaacacctttgctttcaggcgtggttgaactttatgatagtttgcatttgaagttgttaaa 2741991  T
Q  315 tggatccattgctttc 330  Q
    ||||||||||||||||    
T  2741990 tggatccattgctttc 2741975  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 330
Target Start/End: Complemental strand, 286647 - 286472
Alignment:
Q  155 atggaatgtgtcactggttgagtttaactgatgaaagtaattgtcatagtgttgagccacacatggtgtcatttgacttatacaatgaggtattccttac 254  Q
    ||||||||||||| |||| |||| ||| |||||| | ||||| |  || ||  ||||||| | |||||||||||||| ||| ||||||||| ||||||||    
T  286647 atggaatgtgtcattggtggagtctaaatgatgacaataattatagtaatgcggagccacgcttggtgtcatttgacctatgcaatgaggtgttccttac 286548  T
Q  255 aacacctttgctctcaggcgtggtcgaactttatgatagtttgcatttgacgttgttaaatggatccattgctttc 330  Q
    ||||||||||| ||||| | |||| || | |||||||| ||  ||||| || || |||||||| || |||| ||||    
T  286547 aacacctttgccctcagacatggttgaccgttatgatatttgtcatttaacatttttaaatgggtcaattggtttc 286472  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 286736 - 286676
Alignment:
Q  54 gtgggagatatatagtctaagaagcaattcttggagaaaacttaatattgaaattccttgt 114  Q
    |||||||||||||| ||||||| | ||||||||||| |||||| ||||| |||| ||||||    
T  286736 gtgggagatatataatctaagatgtaattcttggaggaaacttgatattaaaatgccttgt 286676  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 25319666 - 25319617
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttggagaaaacttaatattga 104  Q
    |||||||||||||| |||||||| || || |||||||||||| |||||||    
T  25319666 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattga 25319617  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 26149359 - 26149310
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttggagaaaacttaatattga 104  Q
    |||||||||||||| |||||||| || || |||||||||||| |||||||    
T  26149359 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattga 26149310  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 16920688 - 16920754
Alignment:
Q  41 atgttgaccccaggtgggagatatatagtctaagaagcaattcttggagaaaacttaatattgaaat 107  Q
    |||||||||  | |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||    
T  16920688 atgttgaccgtatgtgggagatatatagtctaagaagtaattcttggaggaaacttgatattgaaat 16920754  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 7435606 - 7435573
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttgga 88  Q
    |||||||||||||||||||||||||| |||||||    
T  7435606 tgggagatatatagtctaagaagcaactcttgga 7435573  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 7429354 - 7429322
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttgg 87  Q
    |||||||||||||||||||||||||| ||||||    
T  7429354 tgggagatatatagtctaagaagcaactcttgg 7429322  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 16487118 - 16487077
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttggagaaaactt 96  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  16487118 tgggagatatatagtctaagaaacaactcttggagaaaactt 16487077  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 32642643 - 32642684
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttggagaaaactt 96  Q
    ||||||||||||||| ||||||| || |||||||||||||||    
T  32642643 tgggagatatatagtttaagaagtaactcttggagaaaactt 32642684  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 37512601 - 37512642
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttggagaaaactt 96  Q
    ||||| |||||||| ||||||||||| |||||||||||||||    
T  37512601 tgggatatatatagcctaagaagcaactcttggagaaaactt 37512642  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 42406390 - 42406439
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttggagaaaacttaatattga 104  Q
    ||||||||||||||  |||||||||| |||||||| ||| ||||||||||    
T  42406390 tgggagatatatagcataagaagcaactcttggaggaaaattaatattga 42406439  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 32805173 - 32805213
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttggagaaaact 95  Q
    |||||| |||||||||||||||| ||||||| |||||||||    
T  32805173 tgggaggtatatagtctaagaagtaattcttagagaaaact 32805213  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 42834922 - 42834878
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttggagaaaacttaat 99  Q
    ||||||||||||||| | |||||||| |||||||||||| |||||    
T  42834922 tgggagatatatagtttgagaagcaactcttggagaaaaattaat 42834878  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 9704925 - 9704971
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttggagaaaacttaatat 101  Q
    ||||||||||||||||| ||||| |||||||||| ||||||| ||||    
T  9704925 tgggagatatatagtcttagaagtaattcttggaaaaaacttgatat 9704971  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 40184 - 40135
Alignment:
Q  55 tgggagatatatagtctaagaagcaattcttggagaaaacttaatattga 104  Q
    |||||||||||||| |||||||| || || |||||||||||| |||||||    
T  40184 tgggagatatatagcctaagaagtaactcgtggagaaaacttgatattga 40135  T

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