View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_37 (Length: 343)
Name: NF20578_low_37
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 6945851 - 6946152
Alignment:
| Q |
18 |
gaatccactccctcccttaccaccaccccttgttataagagcattcacaagctccctttcccacacaaacaagtctctacaccaacgaagcccccatctc |
117 |
Q |
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| T |
6945851 |
gaatccactccctcccttaccaccaccccttgttataagagcattcacaagctccctttcccacacaaacaagtctctacaccaacgaagcccccatctc |
6945950 |
T |
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| Q |
118 |
tctccaaccgcattcctttcccacacctccaccaccttcacatcttgacaatttgctaaggtgagaaggcgcggnnnnnnnntccataaaaggcacacta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| |
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| T |
6945951 |
tctccaaccgcattcctttcccacacctccaccaccttcacatcttgacaatttgctaaggtgaaaaggcgcagaaaaaaaatccataaaaggcacacta |
6946050 |
T |
|
| Q |
218 |
gtaatccacgcatccttccaaaagtaagtttccaagccattacccaccttccgaatcaactccctattaaaccaccggttcccttcgacctcctccaact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6946051 |
gtaatccacgcatccttccaaaagtaagtttccaagccattacccaccttccgaatcaactccctattaaaccaccggttcccttcgacctcctccaact |
6946150 |
T |
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| Q |
318 |
cc |
319 |
Q |
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|| |
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| T |
6946151 |
cc |
6946152 |
T |
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