View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_39 (Length: 336)

Name: NF20578_low_39
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_39
NF20578_low_39
[»] chr5 (1 HSPs)
chr5 (19-310)||(14700142-14700433)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 14700433 - 14700142
Alignment:
Q  19 cattggttgcagtggctcaaagttctatggtactttgcagaatgagttaaagtacttgtttgtttcatgtgttgttttctcttttattgacacttataac 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14700433 cattggttgcagtggctcaaagttctatggtacttcgcagaatgagttaaagtacttgtttgtttcatgtgttgttttctcttttattgacacttataac 14700334  T
Q  119 tctccaagccttctctctgtcctagaagaaaatgaaagtgcagaaattttttctataatagaaagaggtgtaagtttccacaagggcacgtaggagaagg 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14700333 tctccaagccttttctctgtcctagaagaaaatgaaagtgcagaaattttttctataatagaaagaggtgtaagtttccacaagggcacgtaggagaagg 14700234  T
Q  219 taaagaagcatcttattaggatttgtctttcatgaaagacagcaaaacaaattgaccaatgnnnnnnnggatcctccccactttctgtgctc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  14700233 taaagaagcatcttattaggatttgtctttcatgaaagacagcaaaacaaattgaccaatgaaaaaaaggatcctccccactttctgtgctc 14700142  T

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