View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_42 (Length: 326)
Name: NF20578_low_42
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 11616091 - 11615772
Alignment:
| Q |
1 |
ccttctccgattcaatcacgtgcttggccggttttgttggatggtcgtgatttgattggaattgcggctactgggtcaggttagttttgatgtttactgc |
100 |
Q |
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| T |
11616091 |
ccttctccgattcaatcacgtgcttggccgtttttgttggatggtcgtgatttgattggaattgcggctactgggtcaggttagttttgatgtttactgc |
11615992 |
T |
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| Q |
101 |
att----aattgaatttgattatcattttggtggttattttataattgttatttgttaccttgtaatattaatatttagtattagggtctgtttgaattg |
196 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
11615991 |
attaattaattgaatttgattatcattttggtggttattttataattgttatttgttactttgtaatattaatatttagtattagggtctgtttgaa-tg |
11615893 |
T |
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| Q |
197 |
gtttatttgagcttatttacttacaatacttacataagttcttgttgtgagactgtttggaagaat-----------ttgagaaaacaaggccctgtttg |
285 |
Q |
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| T |
11615892 |
gtttatttgagcttatt---------tacttacataagtacttgttgtgagactgtttggaagaatttgagaaaacattgagaaaacaaggccctgtttg |
11615802 |
T |
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| Q |
286 |
gataaataacttcatctgcagcttaagtat |
315 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11615801 |
gataaataacttcatctgcagcttaagtat |
11615772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 11684560 - 11684520
Alignment:
| Q |
177 |
attagggtctgtttgaattggtttatttgagcttatttact |
217 |
Q |
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| T |
11684560 |
attagggtctgtttagattggtttatttgagcttatctact |
11684520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 36495403 - 36495436
Alignment:
| Q |
179 |
tagggtctgtttgaattggtttatttgagcttat |
212 |
Q |
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| T |
36495403 |
tagggtctgtttggattggtttatttgagcttat |
36495436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 900629 - 900661
Alignment:
| Q |
185 |
ctgtttgaattggtttatttgagcttatttact |
217 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
900629 |
ctgtttgaattggtttatttgagcttatatact |
900661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 18591889 - 18591921
Alignment:
| Q |
180 |
agggtctgtttgaattggtttatttgagcttat |
212 |
Q |
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| T |
18591889 |
agggtctgtttgaattggtttaattgagcttat |
18591921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 36643794 - 36643826
Alignment:
| Q |
184 |
tctgtttgaattggtttatttgagcttatttac |
216 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
36643794 |
tctgtttggattggtttatttgagcttatttac |
36643826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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