View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_47 (Length: 287)

Name: NF20578_low_47
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_47
NF20578_low_47
[»] chr3 (2 HSPs)
chr3 (10-270)||(8342366-8342626)
chr3 (56-270)||(26728034-26728248)
[»] chr1 (4 HSPs)
chr1 (19-222)||(11544469-11544672)
chr1 (76-270)||(44612488-44612682)
chr1 (77-270)||(44145291-44145484)
chr1 (21-256)||(16818024-16818259)
[»] scaffold0017 (2 HSPs)
scaffold0017 (78-270)||(174202-174394)
scaffold0017 (157-269)||(169296-169408)
[»] scaffold0061 (1 HSPs)
scaffold0061 (157-269)||(29384-29496)
[»] chr2 (3 HSPs)
chr2 (121-270)||(29228084-29228233)
chr2 (121-270)||(29341383-29341532)
chr2 (105-149)||(12249350-12249394)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 8342626 - 8342366
Alignment:
Q  10 caatgagagtagttattatggatgatagaacctgaaatttctccgctcaagttgttatcaaaagcttcaaatctctccaaggtgcatatattcccaatgg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8342626 caatgagagtagttattatggatgatagaacctgaaatttctccgctcaagtggttatcaaaagcttcaaatctctccaaggtgcatatattcccaatgg 8342527  T
Q  110 attttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaatcatgatgaatggtaccttttaacaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8342526 attttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaatcatgatgaatggtaccttttaacaa 8342427  T
Q  210 gttatcattaagttgaagctcttgaagattagagctgtggttaagcacccagtggaatatc 270  Q
    |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  8342426 gttatcatgaagttgaagctcttgaagattagagttgtagttaagcacccagtggaatatc 8342366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 56 - 270
Target Start/End: Complemental strand, 26728248 - 26728034
Alignment:
Q  56 tcaagttgttatcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaatt 155  Q
    |||||||||||||||||||| ||||| | | ||||||||||||| ||||||||||||||||||| |||||||||||| ||||  | ||||| | || |||    
T  26728248 tcaagttgttatcaaaagctgcaaatttttgcaaggtgcatatactcccaatggattttgggatcttgccttctagactgttgtctgagagttcgagatt 26728149  T
Q  156 cacaagtgaatgcattttgttgccaaaatcatgatgaatggtaccttttaacaagttatcattaagttgaagctcttgaagattagagctgtggttaagc 255  Q
    |||||||||||||||| ||||||||||||||| | |||| |||||| |||  ||||||| |  ||| |  || ||||||||||||||| ||| |||||||    
T  26728148 cacaagtgaatgcattatgttgccaaaatcatcaggaatagtacctcttacaaagttattagaaaggtagaggtcttgaagattagaggtgtagttaagc 26728049  T
Q  256 acccagtggaatatc 270  Q
    ||| |||||||||||    
T  26728048 accaagtggaatatc 26728034  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 11544469 - 11544672
Alignment:
Q  19 tagttattatggatgatagaacctgaaatttctccgctcaagttgttatcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttggga 118  Q
    |||||||||||||||||| || |||||||  |||| ||||||  |||||||  ||||||||||  || |||||||||||| || ||||||||||||||||    
T  11544469 tagttattatggatgataaaatctgaaatccctccactcaagcggttatcacgagcttcaaatgactgcaaggtgcatatgtttccaatggattttggga 11544568  T
Q  119 tattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaatcatgatgaatggtaccttttaacaagttatcatt 218  Q
    | |||||||||||| ||||  | |||||||||| || ||||||||| ||||||  |||||||||||||| | ||||||||||| ||||||||||| |||     
T  11544569 tcttgccttctagactgttctctgagagatagagatgcacaagtgattgcattacgttgccaaaatcatcaggaatggtacctcttaacaagttaccata 11544668  T
Q  219 aagt 222  Q
    ||||    
T  11544669 aagt 11544672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 270
Target Start/End: Complemental strand, 44612682 - 44612488
Alignment:
Q  76 tcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgt 175  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||| |  | ||||| || | | ||||| ||||||||| |||    
T  44612682 tcaaatgtctccaaggtgcaaatattcccaattgattttgggatcttgccttctagatagttgcttgtgagattgagacttacaagcgaatgcattatgt 44612583  T
Q  176 tgccaaaatcatgatgaatggtaccttttaacaagttatcattaagttgaagctcttgaagattagagctgtggttaagcacccagtggaatatc 270  Q
    | |||||||||| | ||||||||||| | |||||||||| |  ||| | ||| | ||||||||| ||| ||| |||||||| ||| | |||||||    
T  44612582 ttccaaaatcattaggaatggtacctctcaacaagttattagaaaggtcaaggtgttgaagattggagttgtagttaagcatccaatcgaatatc 44612488  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 77 - 270
Target Start/End: Complemental strand, 44145484 - 44145291
Alignment:
Q  77 caaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgtt 176  Q
    ||||| ||| ||||||||| ||||||||||| ||||||||||| || ||||||||||||||    |||||||  | | | ||||| ||||||||| ||||    
T  44145484 caaatgtctgcaaggtgcaaatattcccaattgattttgggatctttccttctagattgttgtatgagagatcaagacttacaagcgaatgcattatgtt 44145385  T
Q  177 gccaaaatcatgatgaatggtaccttttaacaagttatcattaagttgaagctcttgaagattagagctgtggttaagcacccagtggaatatc 270  Q
     |||||||||| | |||||||| || ||||||||||| ||| ||| | ||| | ||||||||| ||| ||| |||||||||||| | |||||||    
T  44145384 tccaaaatcatcaggaatggtatctcttaacaagttaccataaagctcaaggtgttgaagattggagttgtagttaagcacccaattgaatatc 44145291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 16818259 - 16818024
Alignment:
Q  21 gttattatggatgatagaacctgaaatttctccgctcaagttgttatcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttgggata 120  Q
    |||||||||||||||| || ||||||| || || ||||||| || ||||  |||   ||||   | ||||||||||||||||||||| |||||||||||     
T  16818259 gttattatggatgataaaatctgaaatctccccactcaagtggtaatcattagccctaaatgcttgcaaggtgcatatattcccaatcgattttgggatc 16818160  T
Q  121 ttgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaatcatgatgaatggtaccttttaacaagttatcattaa 220  Q
    || ||||| ||| | ||    ||||||| || ||| ||||||||||||||| |||  ||||||||||   ||||||||||| |||||||||||| |  ||    
T  16818159 tttccttcaagactattgtaggagagatcgacattaacaagtgaatgcattatgtaaccaaaatcatctagaatggtacctcttaacaagttattagaaa 16818060  T
Q  221 gttgaagctcttgaagattagagctgtggttaagca 256  Q
    | | ||||| |||||||||  || ||| ||||||||    
T  16818059 ggtcaagcttttgaagattgaagttgtagttaagca 16818024  T

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Target: scaffold0017 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 270
Target Start/End: Complemental strand, 174394 - 174202
Alignment:
Q  78 aaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttg 177  Q
    |||| ||||||||||||| ||||||||||  ||||||||||| || ||||||| | |||| |  |||||||  | | | ||||||||||||||| ||||     
T  174394 aaatgtctccaaggtgcaaatattcccaactgattttgggatctttccttctaaactgttccatgagagatcaagacttacaagtgaatgcattatgttt 174295  T
Q  178 ccaaaatcatgatgaatggtaccttttaacaagttatcattaagttgaagctcttgaagattagagctgtggttaagcacccagtggaatatc 270  Q
    ||||||||||   |||||| |||| | ||||||||||||  ||| | ||| | ||||||||| ||||||| ||||| |||||| | |||||||    
T  174294 ccaaaatcatccggaatgggacctctcaacaagttatcagaaaggtcaagttgttgaagattggagctgtagttaaacacccaattgaatatc 174202  T

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Target: scaffold0017; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 269
Target Start/End: Complemental strand, 169408 - 169296
Alignment:
Q  157 acaagtgaatgcattttgttgccaaaatcatgatgaatggtaccttttaacaagttatcattaagttgaagctcttgaagattagagctgtggttaagca 256  Q
    ||||||||||||||| |||| |||||||||| | |||| | |||| | |||||||||  |  ||| | ||| | ||||||||||||||||| ||||||||    
T  169408 acaagtgaatgcattatgtttccaaaatcatcaggaataggacctctcaacaagttacgagaaaggtaaaggtgttgaagattagagctgtagttaagca 169309  T
Q  257 cccagtggaatat 269  Q
    |||| | ||||||    
T  169308 cccaattgaatat 169296  T

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Target: scaffold0061 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 269
Target Start/End: Original strand, 29384 - 29496
Alignment:
Q  157 acaagtgaatgcattttgttgccaaaatcatgatgaatggtaccttttaacaagttatcattaagttgaagctcttgaagattagagctgtggttaagca 256  Q
    ||||||||||||||| |||| |||||||||| | |||| | |||| | |||||||||  |  ||| | ||| | ||||||||||||||||| ||||||||    
T  29384 acaagtgaatgcattatgtttccaaaatcatcaggaataggacctctcaacaagttacgagaaaggtaaaggtgttgaagattagagctgtagttaagca 29483  T
Q  257 cccagtggaatat 269  Q
    |||| | ||||||    
T  29484 cccaattgaatat 29496  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 270
Target Start/End: Original strand, 29228084 - 29228233
Alignment:
Q  121 ttgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaatcatgatgaatggtaccttttaacaagttatcattaa 220  Q
    |||||||||||| ||||||  || |||| || | | ||||||||||||||| |||| |||||||||  | ||||||||||| || | || |||||||  |    
T  29228084 ttgccttctagactgttacttgacagattgagacttacaagtgaatgcattatgttcccaaaatcaccaggaatggtacctcttgataaattatcataga 29228183  T
Q  221 gttgaagctcttgaagattagagctgtggttaagcacccagtggaatatc 270  Q
    | | ||| | |||||| || ||||||| ||||| |||| ||| |||||||    
T  29228184 ggtcaaggtgttgaaggtttgagctgtagttaaacaccaagttgaatatc 29228233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 270
Target Start/End: Original strand, 29341383 - 29341532
Alignment:
Q  121 ttgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaatcatgatgaatggtaccttttaacaagttatcattaa 220  Q
    |||||||||||| ||||||  || |||| || | | ||||||||||||||| |||| |||||||||  | ||||||||||| || | || |||||||  |    
T  29341383 ttgccttctagactgttacttgacagattgagacttacaagtgaatgcattatgttcccaaaatcaccaggaatggtacctcttgataaattatcataga 29341482  T
Q  221 gttgaagctcttgaagattagagctgtggttaagcacccagtggaatatc 270  Q
    | | ||| | |||||| || ||||||| ||||| |||| ||| |||||||    
T  29341483 ggtcaaggtgttgaaggtttgagctgtagttaaacaccaagttgaatatc 29341532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 12249350 - 12249394
Alignment:
Q  105 aatggattttgggatattgccttctagattgttaccagagagata 149  Q
    |||||||||||| |||||||||| ||| ||||||||||| |||||    
T  12249350 aatggattttggaatattgccttgtagcttgttaccagatagata 12249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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