View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_49 (Length: 285)

Name: NF20578_low_49
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_49
NF20578_low_49
[»] chr4 (12 HSPs)
chr4 (1-242)||(3762496-3762737)
chr4 (5-255)||(3776564-3776814)
chr4 (6-242)||(3780890-3781126)
chr4 (17-242)||(3751517-3751742)
chr4 (10-242)||(3745700-3745932)
chr4 (1-255)||(3755371-3755625)
chr4 (1-255)||(3766899-3767153)
chr4 (1-80)||(3771304-3771383)
chr4 (118-242)||(3770675-3770799)
chr4 (105-167)||(3789113-3789175)
chr4 (105-242)||(3844991-3845128)
chr4 (124-169)||(3851509-3851554)
[»] chr7 (1 HSPs)
chr7 (6-242)||(25985387-25985623)
[»] scaffold0433 (1 HSPs)
scaffold0433 (105-242)||(10020-10157)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3762737 - 3762496
Alignment:
Q  1 gtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaa 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3762737 gtccgcatgattgacaaccctttgactttaggacccgaactgagttctaaacttgttggaagagctcaaggattctatgcatctgcatcacaggaagaaa 3762638  T
Q  101 taggttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttag 200  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3762637 taggttttcttatgacagtgaattttgctttcattgaaggaaagtataatggtagtactattactatcttggggaggaatccagctcttaataaggttag 3762538  T
Q  201 ggagatgcctgttgttggtggcagtggacttttcagatttgc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3762537 ggagatgcctgttgttggtggcagtggacttttcagatttgc 3762496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 3776814 - 3776564
Alignment:
Q  5 gcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaatagg 104  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  3776814 gcatgattgacaaccctttaactttaggacccgaattgagttctaaacttgttggtagagctcaaggattctatgcatctgcttcacaggaagaaatagg 3776715  T
Q  105 ttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggag 204  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||  |||| |||||||||||||||     
T  3776714 ttttcttatgacaatgaattttgctttcattgaaggaaagtataatggtagtaccattactatcttggggaggaatcatgctcgtaataaggttagggaa 3776615  T
Q  205 atgcctgttgttggtggcagtggacttttcagatttgccacaggttctgct 255  Q
    ||||||||||||||||| |||||||||||||||||||| | ||||| ||||    
T  3776614 atgcctgttgttggtggtagtggacttttcagatttgctagaggttatgct 3776564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 3781126 - 3780890
Alignment:
Q  6 catgattgacaaccctttgactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaataggt 105  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||| |||||    
T  3781126 catgattgacaaccctttaactttaggaccagaactgagttctaagcttgttggaagagctcaaggattctatgcatctgcttcacaagaagaactaggt 3781027  T
Q  106 tttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggaga 205  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| | ||||||||||| ||  |||||  |||||||||||    
T  3781026 tttcttatgacaatgaattttgctttcattgaaggaaagtataatggtagtactcttactatcgtagggaggaatcctgccattaatttggttagggaga 3780927  T
Q  206 tgcctgttgttggtggcagtggacttttcagatttgc 242  Q
    |||||||||||||||| ||||||||||||||||||||    
T  3780926 tgcctgttgttggtggtagtggacttttcagatttgc 3780890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 3751742 - 3751517
Alignment:
Q  17 accctttgactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgac 116  Q
    ||||||||||| |||||||| || |||||||||| |||||||||||||||||||| |||||||||||||||||||| || ||  | ||||||||  || |    
T  3751742 accctttgactataggaccacaattgagttctaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatgattttggttttctcatggc 3751643  T
Q  117 aatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgtt 216  Q
     ||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| | | | ||||||||| ||| ||||||||| || ||    
T  3751642 tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt 3751543  T
Q  217 ggtggcagtggacttttcagatttgc 242  Q
    ||||| ||||||||||||||||||||    
T  3751542 ggtggtagtggacttttcagatttgc 3751517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 3745932 - 3745700
Alignment:
Q  10 attgacaaccctttgactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaataggttttc 109  Q
    |||||||||||||| |||||||||||| || |||||||||| |||||||||||||||||||| || ||||||||||||||| |||| ||  |  ||||      
T  3745932 attgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatgagtttagtttgt 3745833  T
Q  110 ttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcc 209  Q
    |  || | |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||    
T  3745832 tcatggctatgacttttgctttcattgaaggaaagtataatgggagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgcc 3745733  T
Q  210 tgttgttggtggcagtggacttttcagatttgc 242  Q
    | |||||||||| |  |||| ||| ||||||||    
T  3745732 tattgttggtggtaccggacgttttagatttgc 3745700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 3755625 - 3755371
Alignment:
Q  1 gtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaa 100  Q
    ||||||||||| ||||||||||| |||||||||||| |  ||| ||||||  ||||||||||||||||||||||||||||||||||||   | || |||     
T  3755625 gtccgcatgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaag 3755526  T
Q  101 taggttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttag 200  Q
    | | ||| ||| || | |||||||||||||| | ||||||||||||||||||||||||  ||||||| ||||| |||||| | | | || |||| |||||    
T  3755525 ttgatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttag 3755426  T
Q  201 ggagatgcctgttgttggtggcagtggacttttcagatttgccacaggttctgct 255  Q
     |||||||||||  ||||||| |||||| ||||||||||||| | ||||| ||||    
T  3755425 agagatgcctgtgattggtggtagtggatttttcagatttgctagaggttatgct 3755371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 3767153 - 3766899
Alignment:
Q  1 gtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaa 100  Q
    ||||||||||| ||||||||||| |||||||||||| |  ||| ||||||  ||||||||||||||||||||||||||||||||||||   | || |||     
T  3767153 gtccgcatgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaag 3767054  T
Q  101 taggttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttag 200  Q
    | | ||| ||| || | |||||||||||||| | ||||||||||||||||||||||||  ||||||| ||||| |||||| | | | || |||| |||||    
T  3767053 ttgatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttag 3766954  T
Q  201 ggagatgcctgttgttggtggcagtggacttttcagatttgccacaggttctgct 255  Q
     |||||||||||  ||||||| |||||| ||||||||||||| | ||||| ||||    
T  3766953 agagatgcctgtgattggtggtagtggagttttcagatttgctagaggttatgct 3766899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 3771383 - 3771304
Alignment:
Q  1 gtccgcatgattgacaaccctttgactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgc 80  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||    
T  3771383 gtccgcatgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgc 3771304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 3770799 - 3770675
Alignment:
Q  118 atgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttg 217  Q
    |||||||||| ||| | |||||||||||||||||||||||   ||||||| ||||| ||||||   | | || |||| ||| | ||||||||| |  |||    
T  3770799 atgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgagagatgcctatgattg 3770700  T
Q  218 gtggcagtggacttttcagatttgc 242  Q
    |||| | ||||||||||||||||||    
T  3770699 gtggtattggacttttcagatttgc 3770675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 3789175 - 3789113
Alignment:
Q  105 ttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactat 167  Q
    ||||||| |||  ||||| ||||||||| |||||||||||||||||||||| || ||||||||    
T  3789175 ttttcttatgattatgaactttgctttgtttgaaggaaagtataatggaagcaccattactat 3789113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 3845128 - 3844991
Alignment:
Q  105 ttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggag 204  Q
    ||||||| ||| |||||||||||| ||  ||||||| || ||||||||||| || |||||||||||||| || |||   ||   | | |||||||| ||     
T  3845128 ttttcttatgataatgaattttgcattatttgaagggaaatataatggaagcacaattactatcttgggaagaaatgatgcatatgaaaaggttagagaa 3845029  T
Q  205 atgcctgttgttggtggcagtggacttttcagatttgc 242  Q
    ||||||||  ||||||| ||||| ||||| ||||||||    
T  3845028 atgcctgtgattggtggaagtgggctttttagatttgc 3844991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 3851554 - 3851509
Alignment:
Q  124 tttgctttgattgaaggaaagtataatggaagtactattactatct 169  Q
    ||||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  3851554 tttgccttgtttgaaggaaagtataatgggagtaccattactatct 3851509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 242
Target Start/End: Original strand, 25985387 - 25985623
Alignment:
Q  6 catgattgacaaccctttgactttaggaccagaactgagttctaaacttgttggaaaagctcaaggattctatgcatctgcatcacaggaagaaataggt 105  Q
    ||||||||| |||||||| || ||||||||  || ||||||| ||| | ||||||||||| |||||||||||||| ||  |||||||    ||  |||      
T  25985387 catgattgagaaccctttaaccttaggacctcaattgagttccaaattggttggaaaagcacaaggattctatgcctcaacatcacaaagtgaggtagac 25985486  T
Q  106 tttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggaga 205  Q
     || |  || | |||||||||||| | |||||||| ||||| ||||| || || || ||||| |||||||||||||| | |  | ||||||||||||| |    
T  25985487 cttatcatggctatgaattttgctataattgaagggaagtacaatggtagcaccatcactattttggggaggaatcctgtttctgataaggttagggaaa 25985586  T
Q  206 tgcctgttgttggtggcagtggacttttcagatttgc 242  Q
    ||||| |  ||||||| ||||| |||||| |||||||    
T  25985587 tgcctataattggtggtagtggtcttttccgatttgc 25985623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 10020 - 10157
Alignment:
Q  105 ttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggag 204  Q
    ||||||| ||| |||||||||||| ||  ||||||| || ||||||||||| || |||||||||||||| || |||   ||   | | |||||||| ||     
T  10020 ttttcttatgataatgaattttgcattatttgaagggaaatataatggaagcacaattactatcttgggaagaaatgatgcatatgaaaaggttagagaa 10119  T
Q  205 atgcctgttgttggtggcagtggacttttcagatttgc 242  Q
    ||||||||  ||||||| ||||| ||||| ||||||||    
T  10120 atgcctgtgattggtggaagtgggctttttagatttgc 10157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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