View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_5 (Length: 761)

Name: NF20578_low_5
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_5
NF20578_low_5
[»] chr6 (25 HSPs)
chr6 (120-380)||(31564583-31564843)
chr6 (439-725)||(31564838-31565117)
chr6 (528-748)||(33414568-33414788)
chr6 (159-525)||(33385314-33385670)
chr6 (159-525)||(33259583-33259959)
chr6 (1-128)||(31564390-31564521)
chr6 (528-748)||(33258194-33258416)
chr6 (553-748)||(33269541-33269740)
chr6 (333-525)||(33416152-33416345)
chr6 (528-748)||(33395052-33395274)
chr6 (526-698)||(33278972-33279139)
chr6 (340-525)||(24631975-24632161)
chr6 (528-632)||(33293090-33293194)
chr6 (621-737)||(33384040-33384156)
chr6 (299-481)||(9165228-9165418)
chr6 (1-107)||(33416426-33416536)
chr6 (571-695)||(33280358-33280482)
chr6 (182-288)||(24631864-24631970)
chr6 (296-370)||(29274300-29274376)
chr6 (691-735)||(33293034-33293078)
chr6 (528-574)||(28873045-28873091)
chr6 (190-265)||(281808-281881)
chr6 (439-480)||(33282241-33282282)
chr6 (439-480)||(33398042-33398083)
chr6 (439-480)||(33408952-33408993)
[»] chr2 (6 HSPs)
chr2 (528-748)||(17447760-17447981)
chr2 (159-224)||(17443537-17443602)
chr2 (296-377)||(34339039-34339122)
chr2 (329-369)||(3102617-3102657)
chr2 (187-264)||(14299588-14299663)
chr2 (296-357)||(7103554-7103615)
[»] scaffold0428 (6 HSPs)
scaffold0428 (528-748)||(2315-2537)
scaffold0428 (159-395)||(3802-4047)
scaffold0428 (526-698)||(15114-15281)
scaffold0428 (571-695)||(13771-13895)
scaffold0428 (439-525)||(3704-3791)
scaffold0428 (439-480)||(11970-12011)
[»] chr5 (7 HSPs)
chr5 (4-98)||(30653203-30653300)
chr5 (248-370)||(11684346-11684468)
chr5 (229-294)||(30653373-30653438)
chr5 (296-377)||(32059660-32059742)
chr5 (333-377)||(10391269-10391313)
chr5 (189-240)||(11457158-11457209)
chr5 (338-377)||(29115328-29115367)
[»] chr8 (8 HSPs)
chr8 (187-265)||(13000381-13000457)
chr8 (304-372)||(26717178-26717246)
chr8 (282-368)||(5290566-5290649)
chr8 (314-377)||(26716527-26716590)
chr8 (187-265)||(30191098-30191174)
chr8 (244-330)||(10079082-10079168)
chr8 (244-293)||(30389108-30389157)
chr8 (296-370)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (189-265)||(43115093-43115167)
chr3 (299-377)||(38462197-38462277)
chr3 (297-370)||(22232749-22232824)
chr3 (304-386)||(3015928-3016011)
chr3 (187-265)||(37273171-37273247)
chr3 (166-262)||(24624250-24624344)
[»] chr7 (4 HSPs)
chr7 (189-302)||(3468614-3468725)
chr7 (296-377)||(3610811-3610894)
chr7 (248-369)||(26935573-26935696)
chr7 (333-411)||(22388014-22388093)
[»] chr1 (2 HSPs)
chr1 (314-367)||(44207697-44207750)
chr1 (187-238)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (282-355)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (314-368)||(32920489-32920543)
chr4 (304-371)||(47970240-47970309)
chr4 (284-354)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 120 - 380
Target Start/End: Original strand, 31564583 - 31564843
Alignment:
Q  120 tttgcccatcttctcatattgttttgcctcttgtggattgatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatgg 219  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31564583 tttgcccatcttttcatattgttttgcctcttgtggattgatatatttgaacttatacactcatattagcacttgtgagactgtttcgaagagttaatgg 31564682  T
Q  220 aaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgactt 319  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||    
T  31564683 aaacaactaatgacatgtccacaaaagttgttttcagcttatttccatatgttgtctagaaaagcttatgaaaatcacttgtaggaaaacagtgtgactt 31564782  T
Q  320 cattttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttatctt 380  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31564783 cattttatcttgttataaaaatagcttatacatatgcaattttatgataagtgtttatctt 31564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 439 - 725
Target Start/End: Original strand, 31564838 - 31565117
Alignment:
Q  439 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtcccctttgaattgcagcaactatatcaccaacacttgcatgaaaaggcgc 538  Q
    ||||||| |||||||||||||| ||| || |||||||||||||||||   |||||||| ||||||||||       |||||||||| |||||||||||||    
T  31564838 tatctttaaattcttacataagatttctattttttaaatgtctattccaccccctttggattgcagcaa-------accaacacttacatgaaaaggcgc 31564930  T
Q  539 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacat 638  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  31564931 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcat 31565030  T
Q  639 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 725  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565031 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 528 - 748
Target Start/End: Complemental strand, 33414788 - 33414568
Alignment:
Q  528 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 627  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||    
T  33414788 tgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcac 33414689  T
Q  628 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaag 727  Q
    ||| |||  ||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  33414688 gatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaag 33414589  T
Q  728 ttgctgcttgtccacaggttc 748  Q
    |||||||||||||||||||||    
T  33414588 ttgctgcttgtccacaggttc 33414568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 159 - 525
Target Start/End: Complemental strand, 33385670 - 33385314
Alignment:
Q  159 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 258  Q
    |||| ||||||||||||  | | |||| ||||||||||| ||||||| |||||||| ||||||||| |  |||||||||||| |||||||||||||||||    
T  33385670 gatgcatttgaacttatctactgatataagcacttgtgaaactgtttggaagagtttatggaaacagctcatgacatgtccataaaagttgttttcagct 33385571  T
Q  259 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagc 356  Q
    | ||||| ||   ||||||||||||||||||||||| |||||||| | |  |||||||||||||||||||  ||| ||||||||| |||||||||| |||    
T  33385570 tttttccataaactgtctagaaaagcttatgaaaatagcttatagcata--agtatgacttcattttatcttttgttataaaaattgcttatacatcagc 33385473  T
Q  357 aattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaattcttaca 456  Q
    | || ||||  ||||| ||||||| |||| ||| |||||| | ||||           |||||| |||| ||||||||||||||||||||||||||||||    
T  33385472 acttatatgtaaagtgcttatcttataagttttcattaggctgttta-----------tcttaggtttccagcctgttcacctatctttgaattcttaca 33385384  T
Q  457 taaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 525  Q
    |||| ||| ||||  |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33385383 taagatttctaatcgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33385314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 159 - 525
Target Start/End: Complemental strand, 33259959 - 33259583
Alignment:
Q  159 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 258  Q
    |||||||||||||||||| | | |||| ||||||||  | ||||||| |||||||| ||||||||  | ||||||||||||| ||||| ||||||||||     
T  33259959 gatgtatttgaacttatatattgatataagcacttgccaaactgtttggaagagtttatggaaacggctaatgacatgtccataaaagctgttttcagcc 33259860  T
Q  259 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttatag-------gaaaacagtatgacttcattttatctt--gctataaaaatagcttata 349  Q
      ||| | |||  ||| ||||||||||||||||||| ||||||||       |||||||||||||||||| ||||||||  | |||||||||||||||||    
T  33259859 attttacatatactgtatagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcaatttatcttttgttataaaaatagcttata 33259760  T
Q  350 cataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaat 449  Q
    |||||||| || ||||  |||   ||||||| ||||||| ||||||| | ||||||||||| | ||||||| |||| |||||  | || |||||||||||    
T  33259759 cataagcacttatatgtaaagctcttatcttataagcttgaattaggctgtttatccaaacaaggtcttaggtttccagccttcttacatatctttgaat 33259660  T
Q  450 tcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 525  Q
    ||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33259659 tcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33259583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 31564521 - 31564390
Alignment:
Q  1 aaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcc 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  31564521 aaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatgaaattgaaaccattactcgagcc 31564422  T
Q  97 tttgtctgaagaagtaatgccggtttgcccat 128  Q
    ||||||||||||||||||||||||||| ||||    
T  31564421 tttgtctgaagaagtaatgccggtttgtccat 31564390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 528 - 748
Target Start/End: Complemental strand, 33258416 - 33258194
Alignment:
Q  528 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 626  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  33258416 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 33258317  T
Q  627 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 726  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  33258316 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 33258217  T
Q  727 gttgctgctt-gtccacaggttc 748  Q
    || |||  || ||||||||||||    
T  33258216 gtagctttttggtccacaggttc 33258194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 553 - 748
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  553 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata----cattcacgattcacacattagtgttcta 648  Q
    ||||||||||||||||||||||| ||||| || | ||||| ||  ||||||| |||||||| ||||||    ||||||| || ||  |||  ||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  649 attgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 748  Q
    ||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33269541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 333 - 525
Target Start/End: Complemental strand, 33416345 - 33416152
Alignment:
Q  333 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctg 432  Q
    ||||||||||||||||||||||||| ||| || || || | ||||||| ||||||||||||||||| ||||||||||| | ||| | ||||||||| |||    
T  33416345 tataaaaatagcttatacataagcactttgataatgagcgcttatcttataagctttaattaggttgtttatccaaacaaggtcatggttttctagtctg 33416246  T
Q  433 ttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 525  Q
    |||||||||||||||||| |||  ||||  || ||||| |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33416245 ttcacctatctttgaatttttagttaagacttctaattgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33416152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 528 - 748
Target Start/End: Complemental strand, 33395274 - 33395052
Alignment:
Q  528 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 627  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||| ||||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||    
T  33395274 tgaaaaggcccaatcataccttagaacaaagggtctctcatcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgac 33395175  T
Q  628 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcgg--tagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 725  Q
    ||| ||| |||   |||||| ||||||||||| |||||||| |||||| | ||   |||||||| | |||||||||||| |||  ||||||| |||||||    
T  33395174 gatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgca 33395075  T
Q  726 agttgctgcttgtccacaggttc 748  Q
    |   |||||||||||||||||||    
T  33395074 ataggctgcttgtccacaggttc 33395052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 526 - 698
Target Start/End: Complemental strand, 33279139 - 33278972
Alignment:
Q  526 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 625  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  33279139 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 33279045  T
Q  626 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 698  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279044 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 340 - 525
Target Start/End: Original strand, 24631975 - 24632161
Alignment:
Q  340 atagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacct 439  Q
    ||||||||| |||||||| || ||||||||| ||||||||| |||  |||||||| |||  |||||||||| | |||||||||||| | | ||||||||     
T  24631975 atagcttatgcataagcacttatatgataagcgtttatcttataatatttaattaagttgcttatccaaacgaggtcttagttttccaacttgttcacca 24632074  T
Q  440 atctttgaattcttacataaggtttgtaatttttaaatgtctattctg-tcccctttgaattgcagcaactatatcaccaacacttg 525  Q
    |||||||||||| |||||||| ||| ||||| |||||||||| ||||| |||  |||| |||||||||||| |||||||| ||||||    
T  24632075 atctttgaattcctacataagatttctaattgttaaatgtctgttctgctcctgtttggattgcagcaactttatcaccagcacttg 24632161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 528 - 632
Target Start/End: Complemental strand, 33293194 - 33293090
Alignment:
Q  528 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 627  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||  |||||||||||||| | |||||||||||||    
T  33293194 tgaaaaggtgaaagcatacctcagaaaaaagggtctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcac 33293095  T
Q  628 gattc 632  Q
    |||||    
T  33293094 gattc 33293090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 621 - 737
Target Start/End: Complemental strand, 33384156 - 33384040
Alignment:
Q  621 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 720  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  721 atgcaagttgctgcttg 737  Q
    |||||||| ||||||||    
T  33384056 atgcaagtggctgcttg 33384040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 299 - 481
Target Start/End: Complemental strand, 9165418 - 9165228
Alignment:
Q  299 tataggaaaacagtatgacttcatttta--tcttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattagg 396  Q
    |||||||||||||||||||||||| |||  | ||| ||||||||||||||||||||||| | || |||| ||||   ||||||| |||||||||||||||    
T  9165418 tataggaaaacagtatgacttcatcttaccttttgttataaaaatagcttatacataagtacttatatg-taagcacttatcttataagctttaattagg 9165320  T
Q  397 ttatttatccaaac-------taagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 481  Q
       |||||||||||       ||  || ||| |||  |||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  9165319 gcgtttatccaaacaaggtcatagctcataggtttgcagcctgttcacctatctttgaatttttacataagatttctaattgttaaatgtct 9165228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 33416426 - 33416536
Alignment:
Q  1 aaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcc 96  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||    
T  33416426 aaattcaaatctgtccaacatatttacttctatttgatatagaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagcc 33416525  T
Q  97 tttgtctgaag 107  Q
    ||  |||||||    
T  33416526 ttcatctgaag 33416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 571 - 695
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  571 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 670  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  671 actttatcggtagaagtgagaaatt 695  Q
    ||||| | || ||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 24631864 - 24631970
Alignment:
Q  182 atattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaa 281  Q
    |||| ||||||||||| ||| ||| |||||||| |||||||||||  |||| ||||||| ||||| |||||| |||||||||||  | | ||| ||||||    
T  24631864 atataagcacttgtgaaactatttggaagagtttatggaaacaactcatgatatgtccataaaagctgtttttagcttatttccaaaagctgtttagaaa 24631963  T
Q  282 agcttat 288  Q
    |||||||    
T  24631964 agcttat 24631970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 29274300 - 29274376
Alignment:
Q  296 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 370  Q
    ||||||| ||||||| | |||||| ||||||||||  |||||| |||||||||||||||||||| || |||||||||    
T  29274300 gcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 691 - 735
Target Start/End: Complemental strand, 33293078 - 33293034
Alignment:
Q  691 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgct 735  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgct 33293034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 528 - 574
Target Start/End: Original strand, 28873045 - 28873091
Alignment:
Q  528 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctg 574  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||    
T  28873045 tgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 281808 - 281881
Alignment:
Q  190 acttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 265  Q
    |||||||||||||||| | |||| |||||||| ||||  ||||||||||   | ||||||||||||||||||||||    
T  281808 acttgtgagactgtttgggagagctaatggaagcaacttatgacatgtc--tataagttgttttcagcttatttcc 281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 33282282 - 33282241
Alignment:
Q  439 tatctttgaattcttacataaggtttgtaatttttaaatgtc 480  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33282282 tatcgttgaattcttacataagatttctaatttttaaatgtc 33282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 33398083 - 33398042
Alignment:
Q  439 tatctttgaattcttacataaggtttgtaatttttaaatgtc 480  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33398083 tatcgttgaattcttacataagatttataatttttaaatgtc 33398042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 33408993 - 33408952
Alignment:
Q  439 tatctttgaattcttacataaggtttgtaatttttaaatgtc 480  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33408993 tatcgttgaattcttacataagatttataatttttaaatgtc 33408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 8e-60; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 528 - 748
Target Start/End: Original strand, 17447760 - 17447981
Alignment:
Q  528 tgaaaaggcgcaagcatacctcagaaaaaaggg-tctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattca 626  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||    
T  17447760 tgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattca 17447859  T
Q  627 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 726  Q
    |||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||||||||| ||| |||||||||||||||||    
T  17447860 cgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaa 17447959  T
Q  727 gttgctgcttgtccacaggttc 748  Q
    || ||||||| |||||||||||    
T  17447960 gtggctgcttttccacaggttc 17447981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 17443537 - 17443602
Alignment:
Q  159 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaaca 224  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| |||||||||    
T  17443537 gatgtatttgaacttatatactgatataagcacttgtgagactgtttggaagagtttatggaaaca 17443602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 34339122 - 34339039
Alignment:
Q  296 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 377  Q
    ||||||| ||||||||| |||||| ||||||||||  |||||| ||| || ||||||||||||| || ||||||||||||||||    
T  34339122 gcttatacgaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttat 34339039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 3102657 - 3102617
Alignment:
Q  329 ttgctataaaaatagcttatacataagcaattttatgataa 369  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  3102657 ttgctataaaaatagcttatacataagcagttatatgataa 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 14299588 - 14299663
Alignment:
Q  187 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttc 264  Q
    |||||||| | |||||||| |||||||| |||||||||||  ||||||| |||| | |  ||||||||||||||||||    
T  14299588 agcacttgagggactgtttggaagagtttatggaaacaacttatgacatatccataca--ttgttttcagcttatttc 14299663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 7103554 - 7103615
Alignment:
Q  296 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagca 357  Q
    |||||||  |||||||| |||||| ||||||||||| |||||| |||| || ||||||||||    
T  7103554 gcttatattaaaacagtttgactttattttatcttgttataaatatagtttctacataagca 7103615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 95; Significance: 4e-46; HSPs: 6)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 528 - 748
Target Start/End: Complemental strand, 2537 - 2315
Alignment:
Q  528 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 626  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  2537 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 2438  T
Q  627 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 726  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  2437 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 2338  T
Q  727 gttgctgctt-gtccacaggttc 748  Q
    || |||  || ||||||||||||    
T  2337 gtagctttttggtccacaggttc 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 159 - 395
Target Start/End: Complemental strand, 4047 - 3802
Alignment:
Q  159 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 258  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| ||||||||  |  |||||||||||| ||||| ||||||||||     
T  4047 gatgtatttgaacttatatattgatataagcacttgtgagactgtttggaagagtttatggaaacggctcatgacatgtccataaaagctgttttcagcc 3948  T
Q  259 tatttccgtatgttgtctagaaaagcttatgaaaatcgct-------tataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttata 349  Q
      ||| | |||  ||||||||||||||||||||||| |||       ||||||||||||||||||||||| ||||||  ||| ||||||||||||||| |    
T  3947 attttacatatactgtctagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcagtttatcttttgttataaaaatagcttaca 3848  T
Q  350 cataagcaattttatgataagtgtttatcttgtaagctttaattag 395  Q
    |||||||| || ||||  ||| | ||||||| ||||||| ||||||    
T  3847 cataagcacttatatgtaaagcgcttatcttataagcttgaattag 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 526 - 698
Target Start/End: Original strand, 15114 - 15281
Alignment:
Q  526 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 625  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  15114 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 15208  T
Q  626 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 698  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15209 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 571 - 695
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  571 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 670  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  671 actttatcggtagaagtgagaaatt 695  Q
    ||||| | || ||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 439 - 525
Target Start/End: Complemental strand, 3791 - 3704
Alignment:
Q  439 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 525  Q
    |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  3791 tatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 3704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 480
Target Start/End: Original strand, 11970 - 12011
Alignment:
Q  439 tatctttgaattcttacataaggtttgtaatttttaaatgtc 480  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  11970 tatcgttgaattcttacataagatttctaatttttaaatgtc 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 30653300 - 30653203
Alignment:
Q  4 ttcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 98  Q
    ||||||||||||||||||| |||||| | |||||||| ||||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653300 ttcaaatctgtctaacataattactt-tgttagatgttgaaaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 248 - 370
Target Start/End: Complemental strand, 11684468 - 11684346
Alignment:
Q  248 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagctta 347  Q
    |||||||| |||||||||||| | | || || | ||||||||||||| ||||||| ||||||||| | |||   || ||| ||| |||||||||||||||    
T  11684468 tgttttcaacttatttccgtaagctctccagcatagcttatgaaaatagcttatatgaaaacagtttcactattttatattttgttataaaaatagctta 11684369  T
Q  348 tacataagcaattttatgataag 370  Q
    ||||| |||| || |||||||||    
T  11684368 tacattagcacttatatgataag 11684346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 30653373 - 30653438
Alignment:
Q  229 atgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaat 294  Q
    ||||||||| || ||||| |||||||||||||||||| || | |||||||||||||||||||||||    
T  30653373 atgacatgttcataaaagctgttttcagcttatttccataagctgtctagaaaagcttatgaaaat 30653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 32059660 - 32059742
Alignment:
Q  296 gcttataggaaaacagtatgacttcattttatctt-gctataaaaatagcttatacataagcaattttatgataagtgtttat 377  Q
    ||||||| ||||||||| |||||| |||||||||| | || ||||| |||||||||||||||| || |||||||||| |||||    
T  32059660 gcttatatgaaaacagtttgactttattttatcttagttacaaaaacagcttatacataagcacttatatgataagtatttat 32059742  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 10391313 - 10391269
Alignment:
Q  333 tataaaaatagcttatacataagcaattttatgataagtgtttat 377  Q
    |||||||||||||||||| |||||| || ||||||||||||||||    
T  10391313 tataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 11457209 - 11457158
Alignment:
Q  189 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtcca 240  Q
    ||||||||||||||||| |||||| | |||||||||||  ||||||||||||    
T  11457209 cacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtcca 11457158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 29115328 - 29115367
Alignment:
Q  338 aaatagcttatacataagcaattttatgataagtgtttat 377  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  29115328 aaatagcttatacataagcacttttatgataaatgtttat 29115367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 13000381 - 13000457
Alignment:
Q  187 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 265  Q
    ||||||||||||||| |||  ||||||| |||| ||||||  |||||||||||||  ||||||||||||||||||||||    
T  13000381 agcacttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccac--aagttgttttcagcttatttcc 13000457  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 26717246 - 26717178
Alignment:
Q  304 gaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtg 372  Q
    ||||| ||| |||||| ||||||||||| ||||||| |||||||| || ||||| || |||||||||||    
T  26717246 gaaaatagtttgactttattttatcttgttataaaattagcttattcagaagcacttatatgataagtg 26717178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 5290649 - 5290566
Alignment:
Q  282 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 368  Q
    |||||||||| || ||||| | ||||||||| |||||  ||||||| ||| |||| |||||||||||||||||||| || |||||||    
T  5290649 agcttatgaatatagcttacatgaaaacagtttgact--attttat-ttgttatagaaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 26716527 - 26716590
Alignment:
Q  314 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 377  Q
    |||||| |||| |||||| |||| || ||||||||||||||||| || ||| ||||||||||||    
T  26716527 tgactttatttaatcttgttatagaagtagcttatacataagcacttatataataagtgtttat 26716590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 30191098 - 30191174
Alignment:
Q  187 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 265  Q
    ||||||||| ||||||||| | |||| | |||||||||||  |||||||||   ||||| |||||||||||||||||||    
T  30191098 agcacttgttagactgtttgggagagcttatggaaacaacttatgacatgt--tcaaaacttgttttcagcttatttcc 30191174  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 10079082 - 10079168
Alignment:
Q  244 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatctt 330  Q
    |||||||||| ||||| ||||| ||   | || |||| |||| |||||||  ||||||| ||||||||| |||||||||||||||||    
T  10079082 aagttgttttaagcttctttccataaactttccagaatagctcatgaaaacagcttatacgaaaacagtttgacttcattttatctt 10079168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 30389157 - 30389108
Alignment:
Q  244 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaa 293  Q
    |||||||||||||||||||| | || ||| ||||| ||||||||||||||    
T  30389157 aagttgttttcagcttattttcataagttctctaggaaagcttatgaaaa 30389108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 34788498 - 34788574
Alignment:
Q  296 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 370  Q
    ||||||| | ||||||| |||||| ||||||||||  |  ||||||||||||||||| |||||| || |||||||||    
T  34788498 gcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataag 34788574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 43115167 - 43115093
Alignment:
Q  189 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 265  Q
    ||||||||||| ||||| |||||||| |||||||||||  ||||||||||  || || |||||||||||||||||||    
T  43115167 cacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtc--cataacttgttttcagcttatttcc 43115093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 38462277 - 38462197
Alignment:
Q  299 tataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 377  Q
    |||| ||||||||| |||||| ||||||||||  | |||| |||||||||||| |||| || || ||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttat 38462197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 22232824 - 22232749
Alignment:
Q  297 cttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagcaattttatgataag 370  Q
    |||||| ||||||||| |||||| ||||||||  ||| |||| ||||||||||||||| |||| || |||||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgataag 22232749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 3015928 - 3016011
Alignment:
Q  304 gaaaacagtatgacttcattttatc-ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc 386  Q
    ||||||||| ||||||||||||||| ||| |||| |||||  | ||||||||||| || ||| |||||||||||| || |||||    
T  3015928 gaaaacagtttgacttcattttatctttgttatagaaataattaatacataagcacttatataataagtgtttatgttataagc 3016011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 37273247 - 37273171
Alignment:
Q  187 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 265  Q
    |||||| |||||||||||| | |||| | |||||||||||  ||||||||||  || |||||||||||| |||||||||    
T  37273247 agcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtc--cataagttgttttcaacttatttcc 37273171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 24624344 - 24624250
Alignment:
Q  166 ttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatt 262  Q
    ||||||||||  | ||| |||||||||||| ||||||||| |||||| | ||| ||||| |  |||||||||||| |||   |||||||||||||||    
T  24624344 ttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaa--ctgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 3468725 - 3468614
Alignment:
Q  189 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttat 288  Q
    ||||| ||||||||||||| ||||||  |||||||||| |||||||||||  || ||||||||| || |||||||||  | ||| ||||| | || ||||    
T  3468725 cacttttgagactgtttcggagagttgttggaaacaactaatgacatgtc--cataagttgtttccaacttatttccacaagttctctaggatagattat 3468628  T
Q  289 gaaaatcgcttata 302  Q
    |||||  |||||||    
T  3468627 gaaaaaagcttata 3468614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 3610811 - 3610894
Alignment:
Q  296 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 377  Q
    |||||||  |||||||| || ||||||||||||||  | | || |||||||||||||||||||| || ||||| ||||||||||    
T  3610811 gcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttat 3610894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 369
Target Start/End: Original strand, 26935573 - 26935696
Alignment:
Q  248 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagct 345  Q
    |||||||||||||||||| || | | | ||||| || |||||||||| ||| ||| ||||||| | | || | ||||||||  ||| |||||||||||||    
T  26935573 tgttttcagcttatttccataagctctttagaatagattatgaaaatagctcatatgaaaacaatttaaccttattttatcatttgttataaaaatagct 26935672  T
Q  346 tatacataagcaattttatgataa 369  Q
    || ||| ||||| || ||||||||    
T  26935673 tacacaaaagcacttatatgataa 26935696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 411
Target Start/End: Original strand, 22388014 - 22388093
Alignment:
Q  333 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc-tttaattaggttatttatccaaact 411  Q
    |||| ||||||||||| |||||||| ||  ||||||||||||||| || |||||  ||||||| ||| ||||||||||||    
T  22388014 tatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaact 22388093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 44207750 - 44207697
Alignment:
Q  314 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgat 367  Q
    |||||| ||||||||||||||||||||||||||| | ||||||| || ||||||    
T  44207750 tgactttattttatcttgctataaaaatagcttacatataagcacttgtatgat 44207697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 15581367 - 15581316
Alignment:
Q  187 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtc 238  Q
    ||||||||||||| ||||| |||||| |||||||||||||  ||||||||||    
T  15581367 agcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtc 15581316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 21335 - 21410
Alignment:
Q  282 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttg--ctataaaaatagcttatacataag 355  Q
    ||||||||||||  ||||||| ||||||| | | |||| ||||||||||   ||||||||||||||||||||||||    
T  21335 agcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataag 21410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 32920489 - 32920543
Alignment:
Q  314 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 368  Q
    |||||| ||||||||||| |||||||||||||||| ||||| || || |||||||    
T  32920489 tgactttattttatcttgttataaaaatagcttatccataaacacttatatgata 32920543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 47970309 - 47970240
Alignment:
Q  304 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagt 371  Q
    ||||| ||| |||||||||||||||||  | |||| |||||||||||||||||||| || ||||| ||||    
T  47970309 gaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 55437345 - 55437415
Alignment:
Q  284 cttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataa 354  Q
    ||||||||||| ||||||| ||||| | | |||||| ||||||| ||| |||| |||||||||||| ||||    
T  55437345 cttatgaaaatagcttatatgaaaataatttgactttattttatattgttatagaaatagcttatagataa 55437415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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