View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_50 (Length: 283)

Name: NF20578_low_50
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_50
NF20578_low_50
[»] chr6 (3 HSPs)
chr6 (19-263)||(29007568-29007813)
chr6 (33-263)||(21409421-21409651)
chr6 (33-249)||(21461710-21461926)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 29007813 - 29007568
Alignment:
Q  19 cagagaaaaaactcaaaataagaggtgggaacaatgtaaagtgtatttttcgagacttgaa-ttaaaatttgtaataacgaacggttcattggatatgtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29007813 cagagaaaaaactcaaaataagaggtgggaacaatgtaaagtgtatttttcgagacttgaaattaaaatttgtaataacgaacggttcattggatatgtg 29007714  T
Q  118 atgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29007713 atgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacac 29007614  T
Q  218 aacactggagaaacagtgatccacctcactgaatcaggaacacgct 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29007613 aacactggagaaacagtgatccacctcactgaatcaggaacacgct 29007568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 33 - 263
Target Start/End: Original strand, 21409421 - 21409651
Alignment:
Q  33 aaaataagaggtgggaacaatgtaaagtgtatttttcgagact-tgaattaaaatttgtaataacgaacggttcattggatatgtgatgattggcagtgt 131  Q
    |||||||| ||  ||||||| ||||||||||||||||||   | | |||||||||| |||||||| || | |||||||||||||||||||||| ||||||    
T  21409421 aaaataagtggcaggaacaaagtaaagtgtatttttcgaatgtctaaattaaaattggtaataacaaatg-ttcattggatatgtgatgattgacagtgt 21409519  T
Q  132 ttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaac 231  Q
    |||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| | ||||||||    
T  21409520 ttacttacacaccgttgtacgacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaatgccatttcgacatacaactcaggagaaac 21409619  T
Q  232 agtgatccacctcactgaatcaggaacacgct 263  Q
    |||||||||| ||| ||||||||||| |||||    
T  21409620 agtgatccacgtcattgaatcaggaaaacgct 21409651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 33 - 249
Target Start/End: Original strand, 21461710 - 21461926
Alignment:
Q  33 aaaataagaggtgggaacaatgtaaagtgtatttttcgagact-tgaattaaaatttgtaataacgaacggttcattggatatgtgatgattggcagtgt 131  Q
    |||||||| ||  ||||||| ||||||||||||||| ||   | | |||||||||| |||||||| || | |||||||||||||||||||||| ||| ||    
T  21461710 aaaataagtggcaggaacaaagtaaagtgtattttttgaatgtataaattaaaattagtaataacaaatg-ttcattggatatgtgatgattgacagcgt 21461808  T
Q  132 ttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaac 231  Q
    |||||||||||||||| ||| |||| || ||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||| ||||| |||||||||     
T  21461809 ttacttacacaccgttgtacaacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaacgccgtttcgacatacaactctggagaaat 21461908  T
Q  232 agtgatccacctcactga 249  Q
    ||||||||||||||||||    
T  21461909 agtgatccacctcactga 21461926  T

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