View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20578_low_52 (Length: 280)
Name: NF20578_low_52
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_52 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 9666532 - 9666263
Alignment:
| Q |
11 |
catcatcagaaaaacacatacactcatcatcacaaataccttcacactcacatcccacaccaaaactcaccgactcatcatcgtcaaccgttctaggcgg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9666532 |
catcatcagaaaaacacatacactcatcatcacaaataccttcacactcacatcccacaccaaaactcaccgactcatcatcgtcaaccgttctaagcgg |
9666433 |
T |
|
| Q |
111 |
cattggtgaaataactgaactcattccaccgcttcccaccttcccattttcacaaccaacaccaaatctcaccaacccaacatcatggatcgttctaggc |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9666432 |
cactggtgaaataactgaactcattccaccgctttccaccttcccattttcacatccaacaccaaatctcaccaacccaacatcatggatcgttctaggc |
9666333 |
T |
|
| Q |
211 |
ggaattggtgaaattactgaactacccccaccatctcccacagacccatcatcacatacaccttgaaaat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9666332 |
ggaattggtgaaattactgaactacccccaccatctcccacagacccatcatcacatacaccttgaaaat |
9666263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University