View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_54 (Length: 277)
Name: NF20578_low_54
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 5458268 - 5458024
Alignment:
| Q |
16 |
atttacattatcaagctaatggagttattttatcttatatgtttgtcataaggaaaacgttcttgtcgttttttcatttctttcttgtcattggacaaat |
115 |
Q |
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| T |
5458268 |
atttacattatcaagctaatggagtttttttatcttatatgtttgtcataaggaaaacgttcttgtcgttttttcatttctttcttgtcattggacaaat |
5458169 |
T |
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| Q |
116 |
attatttgtctcacttgattgataaaatacttgtggacaacaattgaatcaaagagaggaagggaccaagttcaagattttaacctcaaatgacaaagta |
215 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5458168 |
ataatttgtctcatttgattgataaaatacttgtggacaacaattgaatcaaagagaggaagggaccaagttcaagattttaacctcaaatgacaaagta |
5458069 |
T |
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| Q |
216 |
ttatccacgttctttgtctagtcgattgtcacatatatctttcat |
260 |
Q |
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| T |
5458068 |
ttatccacgttctttgtctagtcgattgtcacatatatctttcat |
5458024 |
T |
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