View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_57 (Length: 268)
Name: NF20578_low_57
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 33315778 - 33316004
Alignment:
| Q |
19 |
gaatacctgaataggtgtttatttaatcagaagtatttttcatgcatcaagactttttccaacaaggggttatgctatttcaaaaatagaaacaattaaa |
118 |
Q |
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| T |
33315778 |
gaatacctgaataggtgtttatttaatcagaagtatttttcatgcatcaagactttttccaacaaggggttatgctatttcaaaaatagaaacaattaaa |
33315877 |
T |
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| Q |
119 |
aaatggaattgtatattgggtaggtacaacnnnnnnnnnnnnnncttcaatgtaagctgactttcatatacaattcaagaatgtataaaataatacaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33315878 |
aaatggaattgtatattgggtaggtacaac------atatatatcttcaatgtaagctgactttcatatacaattcaagaatgtataaaataatacaaaa |
33315971 |
T |
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| Q |
219 |
ttgtcttatcacagattgaataaactcatgtgt |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
33315972 |
ttgtcttatcacagattgaataaactcatgtgt |
33316004 |
T |
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