View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_65 (Length: 250)

Name: NF20578_low_65
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_65
NF20578_low_65
[»] chr7 (1 HSPs)
chr7 (1-242)||(5969640-5969877)
[»] chr8 (3 HSPs)
chr8 (86-125)||(6851053-6851092)
chr8 (86-125)||(44156716-44156755)
chr8 (86-126)||(14342531-14342571)
[»] chr3 (2 HSPs)
chr3 (84-119)||(11621109-11621144)
chr3 (86-123)||(27837272-27837309)
[»] chr5 (1 HSPs)
chr5 (86-126)||(20501398-20501438)
[»] chr4 (2 HSPs)
chr4 (84-124)||(6170994-6171034)
chr4 (86-126)||(26250650-26250690)
[»] chr1 (1 HSPs)
chr1 (86-126)||(34750416-34750456)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5969877 - 5969640
Alignment:
Q  1 tttaatatgcgtgaaatttttgctgccaatttannnnnnnnggtttaatagtctagtgactgaaactcacacatttaaatgaatacataaattatgcaat 100  Q
    ||||||||||||||||||||||||||||||||         ||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  5969877 tttaatatgcgtgaaatttttgctgccaattt-ctttttttggtctagtagtctagtgattggaactcacacatttaaatgaatacataaattatgcaat 5969779  T
Q  101 gtctctaacaattgagttatgctcacatgaacgttcttggtgagcatacatatatactcttataaatttgagttcttattaaacaaacaaatgttgggta 200  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5969778 gtctctaacaattgagttatgctcacatgaacgcttctggtgagcatacatatatacccttataaatttgagttcttattaaacaaacaaatgttgggta 5969679  T
Q  201 aacgtcaatgtnnnnnnnctatttacattgtcaattcatctc 242  Q
    |||||||||||       ||||||||||||||||| ||||||    
T  5969678 aacgtcaatgt---aaaactatttacattgtcaatgcatctc 5969640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 6851053 - 6851092
Alignment:
Q  86 cataaattatgcaatgtctctaacaattgagttatgctca 125  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  6851053 cataaattatgcaatgtctctaccaattgagttaagctca 6851092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 44156755 - 44156716
Alignment:
Q  86 cataaattatgcaatgtctctaacaattgagttatgctca 125  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  44156755 cataaattatgcaatgtctctaccaattgagttaagctca 44156716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 14342531 - 14342571
Alignment:
Q  86 cataaattatgcaatgtctctaacaattgagttatgctcac 126  Q
    |||||||||||||||||||||| ||| ||||||| ||||||    
T  14342531 cataaattatgcaatgtctctaccaactgagttaagctcac 14342571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 119
Target Start/End: Original strand, 11621109 - 11621144
Alignment:
Q  84 tacataaattatgcaatgtctctaacaattgagtta 119  Q
    |||||| |||||||||||||||||||||||||||||    
T  11621109 tacatatattatgcaatgtctctaacaattgagtta 11621144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 27837309 - 27837272
Alignment:
Q  86 cataaattatgcaatgtctctaacaattgagttatgct 123  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  27837309 cataaattatacaatgtctctatcaattgagttatgct 27837272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 20501438 - 20501398
Alignment:
Q  86 cataaattatgcaatgtctctaacaattgagttatgctcac 126  Q
    |||||||||||||||||||||| ||| ||||||| ||||||    
T  20501438 cataaattatgcaatgtctctaccaactgagttaagctcac 20501398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 6170994 - 6171034
Alignment:
Q  84 tacataaattatgcaatgtctctaacaattgagttatgctc 124  Q
    |||||||||||||||||||| ||| ||||||||||| ||||    
T  6170994 tacataaattatgcaatgtccctaccaattgagttaagctc 6171034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 26250690 - 26250650
Alignment:
Q  86 cataaattatgcaatgtctctaacaattgagttatgctcac 126  Q
    |||||||||||||||||| ||| ||| ||||||||||||||    
T  26250690 cataaattatgcaatgtccctaccaactgagttatgctcac 26250650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 34750416 - 34750456
Alignment:
Q  86 cataaattatgcaatgtctctaacaattgagttatgctcac 126  Q
    ||||||||||||||| || ||| ||||||||||||||||||    
T  34750416 cataaattatgcaatatccctaccaattgagttatgctcac 34750456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University