View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_66 (Length: 250)
Name: NF20578_low_66
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_66 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 20897143 - 20896904
Alignment:
| Q |
11 |
cacagacagataggtgaacttgtagttgtcatctttagggcacaaggtattttggactataacattctcaatatgctaaggatatgtttggaattccatt |
110 |
Q |
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| T |
20897143 |
cacaaacagataggtgaacttgtagttgtcatctttagggcacaaggtattttggactataacattctcaatatgctaaggatatgtttggaattccatt |
20897044 |
T |
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| Q |
111 |
agtttgcctcaaaggaaatctgtagatactttgaattcacacatacagttgcaaattctcaaccataagccaaacatacaactcaatctaaattttcgtt |
210 |
Q |
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| T |
20897043 |
agtttgcctcaaaggaaatctgtagatactttgaattcacacatacagttgcaaattctcaaacataagccaaacatacaactcaatctaaattttcgtt |
20896944 |
T |
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| Q |
211 |
tcaatattagaacttcaattaaagccaaacaaatttactt |
250 |
Q |
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| T |
20896943 |
tcaatattagaacttcaattaaagccaaacaaatttactt |
20896904 |
T |
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