View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_67 (Length: 249)
Name: NF20578_low_67
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 43383725 - 43383943
Alignment:
| Q |
19 |
acaatgactcgtggtggaaacgtgg------aaggggaagcggttaataataatgagatgataaactgcatcatcggacacaagtgtagcatatgtttga |
112 |
Q |
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| T |
43383725 |
acaatgactcgtggtggaaacgtggaagtggaaggggaagcggttaataataatgagatgattaactgcatcatcggacacaagtgtagcatatgtttga |
43383824 |
T |
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| Q |
113 |
gggtatttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaaccca------caacaccaacaccaacactaccatttga |
206 |
Q |
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| T |
43383825 |
gggtatttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccaaaacaccaacaccaacaccaacactaccatttga |
43383924 |
T |
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| Q |
207 |
tttgaatttcccttttcca |
225 |
Q |
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||||||||||||||||||| |
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| T |
43383925 |
tttgaatttcccttttcca |
43383943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 25870423 - 25870613
Alignment:
| Q |
32 |
gtggaaacgtggaaggggaagcggttaataataatgaga-tgataa--actgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
128 |
Q |
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|||||||||| |||||||||| |||||||| |||| | | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870423 |
gtggaaacgttgaaggggaagaggttaatagtaataataataataatgactgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
25870522 |
T |
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| Q |
129 |
acaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccacaacaccaacaccaacactaccatttgatttgaatttcccttttcca |
225 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
25870523 |
acaagcactcggtggtcataagaggtgtcattgggataaaggggaaccca------cgacaccaacactaccatttgatttgaatttcccttttcca |
25870613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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