View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_7 (Length: 736)
Name: NF20578_low_7
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 11 - 555
Target Start/End: Original strand, 38803717 - 38804255
Alignment:
| Q |
11 |
caaagggatagatgctatgtgtaaatattcggtgccagattctctgaggttgtttttgtcccaatgtgacgatcccccgggcttcccttacgacccaaca |
110 |
Q |
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| T |
38803717 |
caaagggatagatgctatgtgtaaatatttggtgccagattctctgaggttgtttttgtcccaatgtgacgatcccccgggcttcccttacgacccaaca |
38803816 |
T |
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| Q |
111 |
gatacaagttcaaaaacaatttaatgaataaataaaaggcagttgacaactagcagaattttttgcagaaggccggataattttcttccacatttacaca |
210 |
Q |
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| T |
38803817 |
gatacaagttcaaaaacaatttaatgaataaataaaaggcagttgacaactggcagaattttttgcagaaggtcggataattttcttccacatttacacg |
38803916 |
T |
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| Q |
211 |
gtgatgcaagctataaggaggtatataatgggtttacatgaaaaacaattcttatttttgtgaaatttatacattcagccgaagaattaggcctaaagaa |
310 |
Q |
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| T |
38803917 |
gtgatgcaagctataaggaggtatataatgggtttacatgaaaaacaattcttatttttgtgaaatttatacattcagccgaagaattacgcctaaagaa |
38804016 |
T |
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| Q |
311 |
actgcagattttaggtttcacatnnnnnnncaactcttaagtcaaatgcaaatgcatgtccaaagttgcgattaaagcaccgaagcaaaatatgcttaca |
410 |
Q |
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| T |
38804017 |
actgcagattttaggtttcacataaaaaaacaactctt------aattcaaatgcatgtccaaagttgcgattaaagcaccgaagcagaatatgcttaca |
38804110 |
T |
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| Q |
411 |
tttctacatctccgatagaataaagatgcaaaccagtttcctccttaataatatcttctttcacattattttgcagatgcaacataaacccttccatttc |
510 |
Q |
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| T |
38804111 |
tttctacatctccgatagaataaagatgcaaaccagtttcctccttaataatatcgtctttcacattattttgcagatgcaacataaacccttccatttc |
38804210 |
T |
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| Q |
511 |
agcattttgtacaattggttcatccagctgtctgtcaaatattac |
555 |
Q |
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| T |
38804211 |
agcattttgtacaattggttcatccagctgtctgtcaaatattac |
38804255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 632 - 695
Target Start/End: Original strand, 38804332 - 38804395
Alignment:
| Q |
632 |
gattctaatatctttacatttcacagatcacaaagtataataccagtacttattcactaaaaat |
695 |
Q |
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| T |
38804332 |
gattctaatatctttacatttcacagatcacaaagtataataccagtacttattcacaaaaaat |
38804395 |
T |
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