View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_71 (Length: 247)

Name: NF20578_low_71
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_71
NF20578_low_71
[»] chr4 (12 HSPs)
chr4 (66-247)||(31151112-31151292)
chr4 (86-247)||(31488783-31488944)
chr4 (86-247)||(31030489-31030650)
chr4 (86-247)||(31020608-31020769)
chr4 (92-240)||(31529276-31529424)
chr4 (92-239)||(31160018-31160165)
chr4 (91-235)||(31476203-31476347)
chr4 (92-228)||(31023534-31023670)
chr4 (80-247)||(31496132-31496299)
chr4 (86-247)||(31501308-31501469)
chr4 (164-222)||(31162413-31162471)
chr4 (92-213)||(31244241-31244362)
[»] chr6 (10 HSPs)
chr6 (90-247)||(12785676-12785833)
chr6 (97-247)||(12782237-12782387)
chr6 (90-247)||(12781486-12781643)
chr6 (89-246)||(33307224-33307381)
chr6 (78-246)||(33412656-33412824)
chr6 (78-246)||(33265620-33265788)
chr6 (78-246)||(33274764-33274932)
chr6 (72-118)||(9169557-9169603)
chr6 (209-246)||(33288313-33288350)
chr6 (78-186)||(33403409-33403517)
[»] scaffold1749 (1 HSPs)
scaffold1749 (77-246)||(884-1053)
[»] scaffold0428 (1 HSPs)
scaffold0428 (77-246)||(9645-9814)
[»] chr2 (1 HSPs)
chr2 (85-246)||(17437870-17438031)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 66 - 247
Target Start/End: Complemental strand, 31151292 - 31151112
Alignment:
Q  66 tctcgtcatctccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgca 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151292 tctcgtcatctccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgca 31151193  T
Q  166 aagaaaatgcattttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaatt 247  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151192 aagaaaat-cattttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaatt 31151112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 31488783 - 31488944
Alignment:
Q  86 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 185  Q
    |||||||||||||||||||||| ||| |||||| ||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||| | |    
T  31488783 aattattatgacgtgtttgtcaccttcagaggtgaagatactcgcttcaactttactgatcatctttttgctgcccttcaaagaaaaggcatttttgcgt 31488882  T
Q  186 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaatt 247  Q
    | || ||||| ||||||||  | ||||||||||| |||||||| || ||| |||| ||||||    
T  31488883 ttagagatgacactaagcttcaaaaaggtgaatcgatagcacccgagctcattcgtgcaatt 31488944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 31030650 - 31030489
Alignment:
Q  86 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 185  Q
    ||||||||||| |||||||||| |||||||||  ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||    
T  31030650 aattattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 31030551  T
Q  186 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaatt 247  Q
    | || || || ||||| ||  | ||||||||||||||| |||| || ||| |||| ||||||    
T  31030550 ttagagacgacactaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaatt 31030489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 31020769 - 31020608
Alignment:
Q  86 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 185  Q
    ||||||||||| |||||||||| |||||||||  ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||    
T  31020769 aattattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcat 31020670  T
Q  186 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaatt 247  Q
    | || || ||  |||| ||  | ||||||||||||||| |||| || ||| |||| ||||||    
T  31020669 ttagagacgacgctaatcttcaaaaaggtgaatccataccacccgagctcattcgtgcaatt 31020608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 240
Target Start/End: Complemental strand, 31529424 - 31529276
Alignment:
Q  92 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 191  Q
    |||||||||||| ||||||| |||||   ||| |||||  ||||||||||||||||||||||| | ||||| |||| || | ||||| || |||| || |    
T  31529424 tatgacgtgtttatcagcttcagaggagcagacacacgattcaacttcactgatcatcttttttccgccctccaaataagaggcattgttgcatttagag 31529325  T
Q  192 atgatactaagctgaagaaaggtgaatccatagcacctgaactccttcg 240  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||||    
T  31529324 atgacactaagcttaagaaaggtgaatctatagcacctgaactccttcg 31529276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 31160165 - 31160018
Alignment:
Q  92 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 191  Q
    |||||||| ||||| |||||||||||  |||| |||| |  ||| ||  | |||||||||||||||||||| ||||||||| ||||  || |||||||||    
T  31160165 tatgacgtttttgtgagctttagaggccaagacacacacaacaattttgccgatcatctttttgctgcccttcaaagaaaaggcatcgttgcattcaggg 31160066  T
Q  192 atgatactaagctgaagaaaggtgaatccatagcacctgaactccttc 239  Q
    ||||| |||| |||||||||||||||||||||||||| || |||||||    
T  31160065 atgattctaacctgaagaaaggtgaatccatagcacccgagctccttc 31160018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 31476203 - 31476347
Alignment:
Q  91 ttatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcagg 190  Q
    ||||||||||||||| ||||| |||||| ||||||| |||  ||| |||||||||   ||||||| ||||||  ||  |||| |  ||||| |||| |||    
T  31476203 ttatgacgtgtttgtgagcttcagaggtgaagatactcgcaacaatttcactgatttcctttttgatgccctcgaagaaaaaggtgtttttgcatttagg 31476302  T
Q  191 gatgatactaagctgaagaaaggtgaatccatagcacctgaactc 235  Q
    ||||| ||||| ||  | |||||||||||||||||||||||||||    
T  31476303 gatgacactaatcttcaaaaaggtgaatccatagcacctgaactc 31476347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 228
Target Start/End: Complemental strand, 31023670 - 31023534
Alignment:
Q  92 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 191  Q
    |||||||||||||| ||||| | ||||||||| || |||  |||||||| |||||||||||||||| || | | ||||||| | ||  || |||||| ||    
T  31023670 tatgacgtgtttgtgagcttcaaaggtaaagacactcgctacaacttcattgatcatctttttgcttccttccgaagaaaaggtatcattgcattcaagg 31023571  T
Q  192 atgatactaagctgaagaaaggtgaatccatagcacc 228  Q
    | ||| | | ||| ||||||||||||||||| |||||    
T  31023570 acgatgcaatgctcaagaaaggtgaatccattgcacc 31023534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 31496132 - 31496299
Alignment:
Q  80 aggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattt 179  Q
    ||||| ||| |||||||||||||||||| |||||||||| | || || |||  ||| ||||||||||||||||||| | || | || ||| || ||||||    
T  31496132 aggagcaatcattatgacgtgtttgtcacctttagaggtgaggacactcgcaacaatttcactgatcatctttttgataccttccacagagaaggcattt 31496231  T
Q  180 tttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaatt 247  Q
     | |||| || ||||| ||||| ||    |||||||||||||||| |||| | |||||| | ||||||    
T  31496232 ctgcatttagagatgacactaatcttccaaaaggtgaatccataggacctaagctcctttgtgcaatt 31496299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 31501308 - 31501469
Alignment:
Q  86 aattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcat 185  Q
    ||||||||||| | ||||||||  ||||||||| |||| || |||  ||| |||||| |||||||||||| |||| |  | ||| || ||||| || |||    
T  31501308 aattattatgatgcgtttgtcacttttagaggtgaagacactcgcaacaatttcacttatcatctttttgatgccttcaacagagaaggcattcttgcat 31501407  T
Q  186 tcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaatt 247  Q
    | |||||||| ||||| ||    |||||||||||||||||| | || || ||||| ||||||    
T  31501408 ttagggatgacactaatcttccaaaaggtgaatccatagcatccgagcttcttcgtgcaatt 31501469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 31162471 - 31162413
Alignment:
Q  164 caaagaaaatgcattttttcattcagggatgatactaagctgaagaaaggtgaatccat 222  Q
    ||||||||| | |||||| |||| ||||||||| ||||||| || ||||||||||||||    
T  31162471 caaagaaaaggtatttttgcatttagggatgattctaagctcaacaaaggtgaatccat 31162413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 31244241 - 31244362
Alignment:
Q  92 tatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcaggg 191  Q
    ||||| |||||||| ||||||||||||   || ||||||  ||| ||||||||||| |||||||   | || || | |||| ||||| || | |||||||    
T  31244241 tatgatgtgtttgtgagctttagaggtggcgacacacgcaacaatttcactgatcacctttttggcactctccataaaaaaggcattgttaccttcaggg 31244340  T
Q  192 atgatactaagctgaagaaagg 213  Q
    ||||||| ||||| ||||||||    
T  31244341 atgatacaaagctcaagaaagg 31244362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 12785833 - 12785676
Alignment:
Q  90 attatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcag 189  Q
    |||||||||||||||| |||||||||||   ||| |||||| |||| ||||| |||||||||||||||||||| ||||||  | |||||  | |||||||    
T  12785833 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatctttttgctgccctacaaagacgaggcattaatgcattcag 12785734  T
Q  190 ggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaatt 247  Q
     ||||| ||||| || || |||||||||| ||||||||| | |||| || ||||||||    
T  12785733 agatgacactaaacttaaaaaaggtgaattcatagcacccggactctttagagcaatt 12785676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 247
Target Start/End: Complemental strand, 12782387 - 12782237
Alignment:
Q  97 cgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcagggatgat 196  Q
    ||||||||| ||||| ||||| | ||| |||||  |||| ||||||||||||||||||| |||||| ||||||||| | |||||| ||||||| |||||     
T  12782387 cgtgtttgtgagcttcagaggcacagacacacgtttcaatttcactgatcatctttttggtgcccttcaaagaaaaagaatttttacattcagagatgac 12782288  T
Q  197 actaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaatt 247  Q
    ||||| ||  | |||||| | ||||||||| | || ||| ||| |||||||    
T  12782287 actaatcttcaaaaaggtaattccatagcatccgacctcattcaagcaatt 12782237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 12781643 - 12781486
Alignment:
Q  90 attatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattcag 189  Q
    |||||||||||||||| |||||||||||   ||| |||||| |||| ||||| |||||| ||| ||||||||| ||||||  | |||||  | |||||||    
T  12781643 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatttttgtgctgccctacaaagacgaggcattaatgcattcag 12781544  T
Q  190 ggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaatt 247  Q
     ||||| ||||| || || ||||| |||| ||||||||| | |||| || ||||||||    
T  12781543 agatgacactaaacttaaaaaaggcgaattcatagcacccggactctttagagcaatt 12781486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 246
Target Start/End: Complemental strand, 33307381 - 33307224
Alignment:
Q  89 tattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttcattca 188  Q
    |||||||| |||||||||| ||| |||||| |||| || |||  |||||| ||||||  |||||||| ||||||  ||| |||| |||||||| ||||      
T  33307381 tattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaactttactgattttctttttgatgcccttgaaacaaaaggcatttttgcatttc 33307282  T
Q  189 gggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaat 246  Q
    ||||||| ||||| ||  | || |||||||| |||| |||||| ||||||||||||||    
T  33307281 gggatgacactaatcttcaaaagggtgaatctatagaacctgagctccttcgagcaat 33307224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 246
Target Start/End: Complemental strand, 33412824 - 33412656
Alignment:
Q  78 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 177  Q
    |||| |||||||||||||| |||||||||| ||| |||||| |||| || |||  ||| ||||||||| ||||||||| ||| ||  |||  ||| | ||    
T  33412824 caagaagaaattattatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaatttcactgattatctttttgatgcacttgaaaccaaaggtat 33412725  T
Q  178 tttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaat 246  Q
    || | |||| |||||||| || || || || |||||||||  ||||| |||||| |||||||| |||||    
T  33412724 ttatgcatttagggatgacacaaatcttaaaaaaggtgaagtcataggacctgagctccttcgtgcaat 33412656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 246
Target Start/End: Complemental strand, 33265788 - 33265620
Alignment:
Q  78 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 177  Q
    |||| |||||||||||||| || ||||||| ||| |||||| ||||||| ||   ||| ||||| |||  |||||||| |||||| |||| |||| ||||    
T  33265788 caagaagaaattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcat 33265689  T
Q  178 tttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaat 246  Q
    | ||  |||   |||||| ||||| ||    |||||||||||||| | ||| || ||||||||||||||    
T  33265688 tattgtattttcggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaat 33265620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 246
Target Start/End: Complemental strand, 33274932 - 33274764
Alignment:
Q  78 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 177  Q
    |||| |||||||||||||| || ||||||| ||| |||||| ||||||| ||   ||| ||||| |||  |||||||| |||||| |||| |||| ||||    
T  33274932 caagaagaaattattatgatgtatttgtcaccttcagaggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcat 33274833  T
Q  178 tttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaat 246  Q
    | ||  |||   |||||| ||||| ||    |||||||||||||| | ||| || ||||||||||||||    
T  33274832 tattgtattttcggatgacactaatcttccaaaaggtgaatccattggacccgagctccttcgagcaat 33274764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 9169603 - 9169557
Alignment:
Q  72 catctccaaggagaaattattatgacgtgtttgtcagctttagaggt 118  Q
    ||||||||||||||||| ||||||| |||||| ||| ||||||||||    
T  9169603 catctccaaggagaaatcattatgatgtgtttttcacctttagaggt 9169557  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 33288350 - 33288313
Alignment:
Q  209 aaaggtgaatccatagcacctgaactccttcgagcaat 246  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  33288350 aaaggtgaatccataggacctgagctccttcgagcaat 33288313  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 33403517 - 33403409
Alignment:
Q  78 caaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcat 177  Q
    |||| ||||||||||| || |||||| ||| |||||||||| |||| || ||   ||| |||||||||  |||||||| ||||||  ||| |||| ||||    
T  33403517 caagaagaaattattacgatgtgtttatcacctttagaggtgaagacactcggaacaatttcactgattttctttttgatgcccttgaaacaaaaggcat 33403418  T
Q  178 tttttcatt 186  Q
    |||| ||||    
T  33403417 ttttgcatt 33403409  T

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Target: scaffold1749 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 246
Target Start/End: Complemental strand, 1053 - 884
Alignment:
Q  77 ccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgca 176  Q
    ||||||||||||| ||||||||||||||||| ||| |||||| ||||||| |||  ||| |||||| ||  |||||||||||||||  |||||||| | |    
T  1053 ccaaggagaaattgttatgacgtgtttgtcaccttcagaggtgaagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggta 954  T
Q  177 ttttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaat 246  Q
    ||| | | ||||||||||| || || ||    || ||||||||||||| |||||| ||||||||| ||||    
T  953 tttatgctttcagggatgacacaaatcttccaaagggtgaatccataggacctgagctccttcgaacaat 884  T

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Target: scaffold0428 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 246
Target Start/End: Complemental strand, 9814 - 9645
Alignment:
Q  77 ccaaggagaaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgca 176  Q
    ||||||||||||| ||||||||||||||||| ||| |||||| ||||||| |||  ||| |||||| ||  |||||||||||||||  |||||||| | |    
T  9814 ccaaggagaaattgttatgacgtgtttgtcaccttcagaggtgaagatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggta 9715  T
Q  177 ttttttcattcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaat 246  Q
    ||| | | ||||||||||| || || ||    || ||||||||||||| |||||| ||||||||| ||||    
T  9714 tttatgctttcagggatgacacaaatcttccaaagggtgaatccataggacctgagctccttcgaacaat 9645  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 17437870 - 17438031
Alignment:
Q  85 aaattattatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaagaaaatgcattttttca 184  Q
    |||| ||||||| |||||||||| |||||||||| ||||||| |||  ||| |||||||||  ||||||||  |||||  ||||||||  ||||||| ||    
T  17437870 aaatcattatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgca 17437969  T
Q  185 ttcagggatgatactaagctgaagaaaggtgaatccatagcacctgaactccttcgagcaat 246  Q
    ||  | ||||| ||||| ||  | |||||||||||||||| | |||| || |||||||||||    
T  17437970 tttcgagatgacactaatcttcaaaaaggtgaatccataggatctgagcttcttcgagcaat 17438031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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