View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_72 (Length: 243)
Name: NF20578_low_72
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 44871653 - 44871860
Alignment:
| Q |
19 |
agattgactcgcatgattctcattttccattgttgttgataccatagtaaccgtagcttttttaacagaactggaacaagaggtttcagaatcctcatca |
118 |
Q |
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| T |
44871653 |
agattgactcacatgattctcattttccattgttgttgataccatagtaaccgtagcttttttaacagaactggaacaagaggtttcagaatcctcatca |
44871752 |
T |
|
| Q |
119 |
gaagttgattcagaacttgtactagaggcttcagagtcctcatcagaagttgattcatcaaattccaaaggaattgctattgcttctgcttcctcctcag |
218 |
Q |
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| T |
44871753 |
gaagttgattcagaacttgtactagaggcttcagagtcctcatcagaagttgattcatcaaattccgaaggaattgctattgcttctgcttcctcctcag |
44871852 |
T |
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| Q |
219 |
attctctg |
226 |
Q |
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|||||||| |
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| T |
44871853 |
attctctg |
44871860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 47522620 - 47522432
Alignment:
| Q |
25 |
actcgcatgattctcattttccattgttgttgataccatagtaaccgtagcttttttaacagaactggaacaagaggtttcagaatcctcatcagaagtt |
124 |
Q |
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| T |
47522620 |
actcacatgcttctcattttccattgatgttggtaccgtacctactatagccttattaacatccccggaactagaggtttcagaatcctcatcagaagtt |
47522521 |
T |
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| Q |
125 |
gattcagaacttgtactagaggcttcagagtcctcatcagaagttgattcatcaaattccaaaggaattgctattgcttctgcttcctc |
213 |
Q |
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| T |
47522520 |
gattcagaactggcactagaggcttcagaatcgtcatcagaagttgattcatctgattcagaagaaattgatattgctgctgcttcctc |
47522432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 47528250 - 47528146
Alignment:
| Q |
19 |
agattgactcgcatgattctcattttccattgttgttgataccatagtaaccgtagcttttttaacagaactggaacaagaggtttcagaatcctcatca |
118 |
Q |
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||||||| || |||| |||||||||||| ||| |||||||| |||||||||| ||||||||||||||| || ||| ||||| |||||||||||||| | |
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| T |
47528250 |
agattgaatcacatgcttctcattttccgttgatgttgataatgtagtaaccgtggcttttttaacagaaatgaaactagaggcttcagaatcctcatta |
47528151 |
T |
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| Q |
119 |
gaagt |
123 |
Q |
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||||| |
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| T |
47528150 |
gaagt |
47528146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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