View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_low_78 (Length: 229)

Name: NF20578_low_78
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_low_78
NF20578_low_78
[»] chr6 (5 HSPs)
chr6 (118-225)||(6679707-6679814)
chr6 (118-225)||(6774472-6774579)
chr6 (119-225)||(6765733-6765839)
chr6 (7-83)||(6679849-6679925)
chr6 (7-83)||(6765622-6765698)
[»] chr3 (4 HSPs)
chr3 (142-225)||(49881713-49881796)
chr3 (129-225)||(46522148-46522242)
chr3 (11-83)||(49881833-49881905)
chr3 (11-83)||(46522286-46522358)
[»] chr5 (6 HSPs)
chr5 (118-225)||(6162285-6162393)
chr5 (118-225)||(36847904-36848010)
chr5 (11-83)||(6162179-6162251)
chr5 (11-83)||(36847804-36847876)
chr5 (11-83)||(36859362-36859434)
chr5 (138-191)||(36859477-36859530)
[»] scaffold0299 (1 HSPs)
scaffold0299 (118-225)||(13475-13576)
[»] chr1 (2 HSPs)
chr1 (20-82)||(18135855-18135917)
chr1 (155-206)||(18135739-18135790)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 6679814 - 6679707
Alignment:
Q  118 tggaaggatcaagtgttcattttattagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaaggtacgtagggct 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6679814 tggaaggataaagtgttcattttattagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaaggtacgtagggct 6679715  T
Q  218 tctccact 225  Q
    ||||||||    
T  6679714 tctccact 6679707  T

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Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 6774472 - 6774579
Alignment:
Q  118 tggaaggatcaagtgttcattttattagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaaggtacgtagggct 217  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6774472 tggaaggattaagtgttcgttttattagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaaggtacgtagggct 6774571  T
Q  218 tctccact 225  Q
    ||||||||    
T  6774572 tctccact 6774579  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 6765733 - 6765839
Alignment:
Q  119 ggaaggatcaagtgttcattttattagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaaggtacgtagggctt 218  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| |    
T  6765733 ggaaggattaagtgttcattttattagttctattggcataaaaatagagtttgaaagaaaaataccaatatctcatggtaaacgacggtacgaagggcat 6765832  T
Q  219 ctccact 225  Q
    | |||||    
T  6765833 cgccact 6765839  T

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Target: chr6; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 6679925 - 6679849
Alignment:
Q  7 ttttggaggacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6679925 ttttggaggacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgat 6679849  T

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Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 6765622 - 6765698
Alignment:
Q  7 ttttggaggacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgat 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6765622 ttttggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgat 6765698  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 49881796 - 49881713
Alignment:
Q  142 ttagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaaggtacgtagggcttctccact 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  49881796 ttagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacaaaggtacgaagggcttctccact 49881713  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 46522242 - 46522148
Alignment:
Q  129 agtgttcattttattagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaaggtacgtagggcttctccact 225  Q
    |||| |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46522242 agtgctcattttattagttctattggcattgaaatag--tttaaaagaaaaataccaatatctcatggtaaacgaaggtacgaagggcttctccact 46522148  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 49881905 - 49881833
Alignment:
Q  11 ggaggacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgat 83  Q
    |||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  49881905 ggagcacaggcccatatgtagcaagttgagaaaccccgtttcttacaaaaatcaaggtatccaatctgatgat 49881833  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 46522358 - 46522286
Alignment:
Q  11 ggaggacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgat 83  Q
    |||| |||||||||||||||||||||   |||||||||||  |||||||||||||| ||||||||||||||||    
T  46522358 ggagcacaggcccatatgtagcaagtcaggaaacccctttttttacaaaaatcaaggtatccaatctgatgat 46522286  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 6162285 - 6162393
Alignment:
Q  118 tggaaggatcaagtgttcattttattagttctattggcatagaaatagagtttaaaagaaaaa-taccaatatctcatggtaaacgaaggtacgtagggc 216  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |  ||    
T  6162285 tggaaagattaagtgttcattttattagttttattggcatagaaatagagtttaaaagaaaaaataccaatatctcatggtaaacgaaggtacaaattgc 6162384  T
Q  217 ttctccact 225  Q
    |||||||||    
T  6162385 ttctccact 6162393  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 36847904 - 36848010
Alignment:
Q  118 tggaaggatcaagtgttcattttattagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaaggtacgtagggct 217  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||   ||||||||||||||||||  |||||||||||||||| |||||| ||||||    
T  36847904 tggaaggattaagtgttcattttat-agttctattgacatagaaataatctttaaaagaaaaataccaggatctcatggtaaacgacggtacgaagggct 36848002  T
Q  218 tctccact 225  Q
    || |||||    
T  36848003 tccccact 36848010  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 6162179 - 6162251
Alignment:
Q  11 ggaggacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgat 83  Q
    |||| |||||||| ||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  6162179 ggagcacaggcccgtatgtagcaagttgagaaaccccttttgttacaaaaatcaaggtatccaatctgatgat 6162251  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 36847804 - 36847876
Alignment:
Q  11 ggaggacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgat 83  Q
    |||| ||||| ||||||||||||||||||||||||  ||| ||| ||||||||||| ||||||||||||||||    
T  36847804 ggagcacaggaccatatgtagcaagttgagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgat 36847876  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 36859362 - 36859434
Alignment:
Q  11 ggaggacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgat 83  Q
    |||| ||| |||||||||||||||||||||||||| | || ||| ||||||||||| ||||||||||||||||    
T  36859362 ggagcacatgcccatatgtagcaagttgagaaaccacctttcttgcaaaaatcaaggtatccaatctgatgat 36859434  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 36859477 - 36859530
Alignment:
Q  138 tttattagttctattggcatagaaatagagtttaaaagaaaaataccaatatct 191  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||||| |||||    
T  36859477 tttattagttctcttgacatagaaataaagtttaaaagaaaaataccagtatct 36859530  T

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Target: scaffold0299 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 13576 - 13475
Alignment:
Q  118 tggaaggatcaagtgttcattttattagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaaggtacgtagggct 217  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||      ||||||||||||||||||||||||||| |||| | ||||||    
T  13576 tggaaggattaagtgttcattttattagttctatttgcatagaaatagagttt------aaaataccaatatctcatggtaaacgacggtaagaagggct 13483  T
Q  218 tctccact 225  Q
    || |||||    
T  13482 tcaccact 13475  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 18135917 - 18135855
Alignment:
Q  20 gcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatga 82  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  18135917 gcccacatgtagcaagttgagaaaccccttttcttataaaaatcaaggtatccaatctgatga 18135855  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 18135790 - 18135739
Alignment:
Q  155 catagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaagg 206  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  18135790 catagaaatagagtttaaaataaaaataccaatatctcatggtaaatgaagg 18135739  T

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