View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_low_9 (Length: 612)
Name: NF20578_low_9
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 15808901 - 15808324
Alignment:
| Q |
1 |
agatcatcatagtttctccagttggaatgactcgccttgcctttgttacttctttttgcttcctttgtcaccaaacacagaaactgagtttaagtaacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15808901 |
agatcatcatagtttctccagttggaatgactcgccttgcctttgttacttctttttgcttcctttgtcaccaaacacagaaaatgagtttaagtaacac |
15808802 |
T |
|
| Q |
101 |
atttgaaaacatgcgtaaacgactaatgaatcattgatgtagcatacataccttcattaaattttcatatagtggtgtaataacttccctcaaaaaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15808801 |
atttgaaaacatgcgtaaacgactaatgaatcattgatgtagcatacataccttcattaaattttcatatagtggtgtaataacttccctcaaaaaatgt |
15808702 |
T |
|
| Q |
201 |
tcatcatcacgcgttactatctgatatgcatccccactcacttgataggtattgctatataaaatcccaaagacatcattgcacatctttggaaggaagn |
300 |
Q |
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| T |
15808701 |
tcatcatcacgcgttactatctgatatgcatccccactcacttgataggtattgctatataaaatcccaaagacatcattgcacatctttggaaggaaga |
15808602 |
T |
|
| Q |
301 |
nnnnnntaagagttatcatgataggctcataggaaaatacgatgaatagtatgactttaataaagtttgaattacagttacggataacttacatgatgga |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||| ||| |||||||||||||| |
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| T |
15808601 |
aaaaaaaaagagttatcatgatagtctcataggaaaatacgatgaatagta----------------tcaattaaagttatggactacttacatgatgga |
15808518 |
T |
|
| Q |
401 |
aaatatagcaaagacattcaggcataaagcgaatatttgaagcttctccccatattagaagataaagtgcaatgtaaatcagttctaattgttgtcggtc |
500 |
Q |
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| T |
15808517 |
aaatatagcaaagacatttaggcataaagcgaatatttgaagcttctccccatattagaagataaagtgcaatgtaaatcagttctaattgttgtcggtc |
15808418 |
T |
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| Q |
501 |
ttgaccatctgaatacctattgttaaacaaattgcatatacggaaatgagtcagagtgaaatttaggatacacatattcacttctataactcgt |
594 |
Q |
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| T |
15808417 |
ttgaccatctgaatacctattgttaaacaaattgcatatacggaaatgagtcagagtgaaatttaggatacacacattcacttctataactcgt |
15808324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 553 - 592
Target Start/End: Complemental strand, 45930792 - 45930753
Alignment:
| Q |
553 |
agagtgaaatttaggatacacatattcacttctataactc |
592 |
Q |
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| T |
45930792 |
agagtgcaatttaggatacacatattcacttctataactc |
45930753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 553
Target Start/End: Complemental strand, 45930916 - 45930824
Alignment:
| Q |
461 |
gataaagtgcaatgtaaatcagttctaattgttgtcggtcttgaccatctgaatacctattgttaaacaaattgcatatacggaaatgagtca |
553 |
Q |
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|||||||||||| |||||| |||| |||||| |||| ||| |||||||| ||||||| ||||||| || ||| |||||| |||||||||| |
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| T |
45930916 |
gataaagtgcaacgtaaattagttttaattgctgtctgtcaagaccatctaaatacctggtgttaaaaaagttgtatataccaaaatgagtca |
45930824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 387 - 464
Target Start/End: Original strand, 26014777 - 26014854
Alignment:
| Q |
387 |
acttacatgatggaaaatatagcaaagacattcaggcataaagcgaatatttgaagcttctccccatattagaagata |
464 |
Q |
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||||||||||||| | ||||| ||||| ||||| |||||||| | | ||||| ||||||||||||||| |||||||| |
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| T |
26014777 |
acttacatgatggtagatataacaaaggcattctggcataaatctcaaatttgcagcttctccccatataagaagata |
26014854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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