View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20579_high_1 (Length: 609)
Name: NF20579_high_1
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 19 - 604
Target Start/End: Complemental strand, 6559969 - 6559383
Alignment:
| Q |
19 |
attattcaatgtaatcctatttcaattctctcatgcttgataataatt-gacaccaggtttcttgggggcaaaaggcactcctcattggagggaaaacag |
117 |
Q |
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| T |
6559969 |
attattcaatgtaatcctattttaattctctcatgcttgataataatttgacaccaggtttcttgggggcaaaaggcactcctcattggagggaaaacag |
6559870 |
T |
|
| Q |
118 |
actcaggaatcgacaaaatatctggttcaaccccatgtcatttgcaaatgtaatagctttgtcctgattcatgttgtggagttcttctaattgttatttt |
217 |
Q |
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| T |
6559869 |
actcaggaatcgacaaaatatctggttcaaccccatgtcatttgcaaatgtaatagctttgtcctgattcatgttgtggagttcttctaattgttatttt |
6559770 |
T |
|
| Q |
218 |
tggctttttatagtatgggcgtttgacacagagaccgagtgctggtcactcattgaagcaaagggagacataccggtaggaatattgaaaataaaaattc |
317 |
Q |
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| T |
6559769 |
tggctttttatagtatgggcgtttgacacagagaccgagtgctggtcactcattgaagcaaagggagacataccggtaggaatattgaaaataaaaattc |
6559670 |
T |
|
| Q |
318 |
ctgttttattgaaagttgatcttgtggattgtttatgtgcattttcacaatctaaatatgagtacatgtgctatattggattgcattttacacatcactt |
417 |
Q |
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| T |
6559669 |
ctgttttattgaaagttgattttgtggattgtttatgtgcattttcacaatctaaatatgaggacatgtgctatattggattgcattttacacatcactt |
6559570 |
T |
|
| Q |
418 |
cctatcagaatagttaatatatcatggatcttggtcattattgaaacatgtattgttatgtctatgcttggtgtctcatgtacgtaaatattataattga |
517 |
Q |
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| T |
6559569 |
cctatcagaatagttaatatatcatggatcttggtcattattgaaacatgtattgttatgtctatgcttggtgtctcatgtacgtaaatattataattga |
6559470 |
T |
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| Q |
518 |
ggaattgtatccttacatttattactttcatcgtataaatattgattttgtggtgtatgtgaaacacaattgttagcctatgctact |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6559469 |
ggaattgtatccttacatttattactttcatcgtataaatattgattttgtggtgtatgtgaaacacaattgttagcctatgttact |
6559383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 49327272 - 49327201
Alignment:
| Q |
229 |
agtatgggcgtttgacacagagaccgagtgctggtcactcattgaagcaaagggagacataccggtaggaat |
300 |
Q |
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| T |
49327272 |
agtatgggcgtttgatacagaaagtgagtgctggtcactcatggaggcaaagggagacataccggtaggaat |
49327201 |
T |
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