View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20579_high_10 (Length: 386)
Name: NF20579_high_10
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 46788498 - 46788125
Alignment:
| Q |
1 |
ccagagaaataagcaataaattcttgtatatgtttaaaggggctttttccagggggtataaaaatcaaatcgttccatcatgaactcgttggagaaaaag |
100 |
Q |
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| T |
46788498 |
ccagagaattaagcattaatttcttgtatatgttgaaagtggctttttccagggggtataaaaatcaaatcgttccatcatgaactcgttggagaaaaag |
46788399 |
T |
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| Q |
101 |
agagaatcatcaggatccaaattatttcatagactagtattagtataaccaatacgcaaactttactattactacctccat-tttttttccagtaca--n |
197 |
Q |
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| T |
46788398 |
agagaatcatcaggatccaaattatttcatagactagtattagtataaccaatacgcaaactttactattactacctccatgtttttttccagtacattt |
46788299 |
T |
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| Q |
198 |
nnnnnnnnnnnnaaatatcaactaagaatttggaatttctttctaattctatgtaatgtgaatctcaaattgatcattttgattatttcaaattatgcag |
297 |
Q |
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| T |
46788298 |
tttttttttttaaaatatcaactaagaatttggaatttctttctaattctatgtaagttgaatctcaaattgatcattttgattatttcaaattatgcag |
46788199 |
T |
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| Q |
298 |
attggttcttatatgttttaaaatttacacattggctcatattttttattaaaactttacaatttattccctat |
371 |
Q |
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| T |
46788198 |
attggttcttatatgttttaaaatttacacattgactcatattttttattaaaactttacaatttattccctat |
46788125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 46780933 - 46780894
Alignment:
| Q |
148 |
accaatacgcaaactttactattactacctccattttttt |
187 |
Q |
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| T |
46780933 |
accaataagcaaactttactattactacctccattttttt |
46780894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 46781075 - 46781025
Alignment:
| Q |
21 |
ttcttgtatatgtttaaaggggctttttccagggggtataaaaatcaaatc |
71 |
Q |
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| T |
46781075 |
ttcttgtatatgttgagaacggctttttccagggggaataaaaatcaaatc |
46781025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 6865896 - 6865843
Alignment:
| Q |
279 |
attatttcaaattatgcagattggttcttatatgttttaaaatttacacattgg |
332 |
Q |
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| T |
6865896 |
attatttcaaattatgcaaattgattcttatatgttctaaaaaatacacattgg |
6865843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 36028927 - 36028866
Alignment:
| Q |
284 |
ttcaaattatgcagattggttcttatatgttttaaa-atttacacattggctcatatttttt |
344 |
Q |
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| T |
36028927 |
ttcaaattatgcaaattggttcttatatgtttcaaacaattacacattagcccctatttttt |
36028866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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