View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20579_high_13 (Length: 333)
Name: NF20579_high_13
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 276
Target Start/End: Original strand, 1097102 - 1097369
Alignment:
| Q |
8 |
gacatcatcatcataatgtgtaaattctgatttagttggtatatattttgatgcacgaagaaatgagttcattattacattatgtgaatatgtggatcat |
107 |
Q |
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| T |
1097102 |
gacatcataatcataatgtgtaa-ttctgatttagttggtatatattttgatgcacgaagaaacgagttcattattacattatgtgaatatgtggatcat |
1097200 |
T |
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| Q |
108 |
gctctttcttaaaggatgcttttatttttagagagagtaaacaacattgaatctccaacaattgagaagagaggactcaacattaaggtatgagaattga |
207 |
Q |
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| T |
1097201 |
gttctttcttaaaggatgcttttatttttagagagagtaaacagcattgaatctccaacaattgagaagagaggactcaacattaaggtatgagaattga |
1097300 |
T |
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| Q |
208 |
gatgttgagtggtgcaaaagaggtgcaatgtttaaatttcagcgtgcatttcaagtaatgttctcaatg |
276 |
Q |
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| T |
1097301 |
gatgttgagtggtgcaaaagaggtgcaatgtttaaatttcagcgtgtatttcaagtaatgttctcaatg |
1097369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 1560206 - 1560086
Alignment:
| Q |
17 |
atcataatgtgtaaattctgatttagttggtatatattttgatgcacgaagaaatgagttcattattacattatgtgaatatgtggatcatgctctttct |
116 |
Q |
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| T |
1560206 |
atcataatgtgtaaattctggtttagttggtatatattttgctgcaccaagaaatgagttcattattacattatgtgaatatgtggatcatgctctttct |
1560107 |
T |
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| Q |
117 |
taaaggatgcttttattttta |
137 |
Q |
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| T |
1560106 |
tgaaggatgcttttattttta |
1560086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 1572038 - 1572157
Alignment:
| Q |
17 |
atcataatgtgtaaattctgatttagttggtatatattttgatgcacgaagaaatgagttcattattacattatgtgaatatgtggatcatgctctttct |
116 |
Q |
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| T |
1572038 |
atcataatgtgtaaattctggtttagttggtatatattttgctgcaccaagaa-tgagttcattattacattatgtgaatatgtggatcatgctctttct |
1572136 |
T |
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| Q |
117 |
taaaggatgcttttattttta |
137 |
Q |
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| T |
1572137 |
tgaaggatgcttttattttta |
1572157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 276
Target Start/End: Original strand, 1572509 - 1572544
Alignment:
| Q |
241 |
aaatttcagcgtgcatttcaagtaatgttctcaatg |
276 |
Q |
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| T |
1572509 |
aaatttcagcgtgtatttcaagtaatgttctcaatg |
1572544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 18753693 - 18753572
Alignment:
| Q |
16 |
catcataatgtgtaaattctgatttagttggtatatattttgatgcacgaagaaatgagttcattattacattatgtgaatatgtggatcatgctctttc |
115 |
Q |
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| T |
18753693 |
catcataatgtgtaaattctggtttagttggtatatattttgcagcaccaagaaatgagttcattattacattatatgaatatgtggatcatgctctttc |
18753594 |
T |
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| Q |
116 |
ttaaaggatgcttttattttta |
137 |
Q |
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| T |
18753593 |
ttgaaggatgcttttattttta |
18753572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 18734298 - 18734225
Alignment:
| Q |
137 |
agagagagtaaacaacattgaatctccaacaattgagaagagaggactc---aacattaaggtatgagaattga |
207 |
Q |
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| T |
18734298 |
agagagaggacacgacattgaatctccaacaatagagatgagaggactcaacaacattaaggtatgaaaattga |
18734225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 18727019 - 18726969
Alignment:
| Q |
137 |
agagagagtaaacaacattgaatctccaacaattgagaagagaggactcaa |
187 |
Q |
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| T |
18727019 |
agagagaggacacagcattgaatctccaacaatagagatgagaggactcaa |
18726969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 24495743 - 24495682
Alignment:
| Q |
76 |
tcattattacattatgtgaatatgtggatcatgctctttcttaaaggatgcttttattttta |
137 |
Q |
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| T |
24495743 |
tcattattacattatgtgaatatgtggatcatgctctttcttgaaggatgcttttattttta |
24495682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 24496519 - 24496439
Alignment:
| Q |
16 |
catcataatgtgtaaattctgatttagttgg-----------tatatattttgatgcacgaagaaatgagttcattattac |
85 |
Q |
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| T |
24496519 |
catcataatgtgtaaattctggtttagttggtattaggtatatatatattttgctgcaccaagaaatgagttcattattac |
24496439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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