View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20579_low_12 (Length: 357)
Name: NF20579_low_12
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 8067409 - 8067542
Alignment:
| Q |
22 |
ttagtttttggatggtttagtgcatttacataaatacaattcatatcgtataatgcatccgtcaagtagattttctattatttttaattgtgtattagtt |
121 |
Q |
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| T |
8067409 |
ttagtttttagatggtttagtgcatttacataaatacaattcatatcgtataatgcatccgtcaagtagattttctattatttttaattgtgtattagtt |
8067508 |
T |
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| Q |
122 |
taacatattttattgtactgttgttcggatcaat |
155 |
Q |
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| T |
8067509 |
tgacatattttattgtactgttgttcggatcaat |
8067542 |
T |
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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 8067656 - 8067747
Alignment:
| Q |
266 |
cttacatatttttaagatataaatatatattgtgacaaaaataattataattaaagttgtagttaagcagtttgtttgtttctgtgctgctc |
357 |
Q |
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| T |
8067656 |
cttacatatttttaagatataaatatatattgtgacaaaaataattacaattaaagttgtagttaagcagtttgtttgtttctatgttgctc |
8067747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 12146264 - 12146206
Alignment:
| Q |
270 |
catatttttaagatataaatatatattgtgacaaaaataattataattaaagttgtagt |
328 |
Q |
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| T |
12146264 |
catatttttaagatataaatatatattgtgacaaaaataattacaattaaagttgtagt |
12146206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 44278475 - 44278533
Alignment:
| Q |
270 |
catatttttaagatataaatatatattgtgacaaaaataattataattaaagttgtagt |
328 |
Q |
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| T |
44278475 |
catatttttaagatataaatatatattgcgacaaaaataattacaattaaaattgtagt |
44278533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 36148563 - 36148638
Alignment:
| Q |
270 |
catatttttaagatataaatatatattgtgacaaaaataattataattaaagttgtagttaagcagtttgtttgttt |
346 |
Q |
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| T |
36148563 |
catatttttaagatctaaatatatattgtgagaaaaataattacaa-taaagttgtagttgagcagttcatttgttt |
36148638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 27669401 - 27669365
Alignment:
| Q |
292 |
atattgtgacaaaaataattataattaaagttgtagt |
328 |
Q |
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| T |
27669401 |
atattgtaacaaaaataattacaattaaagttgtagt |
27669365 |
T |
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