View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20579_low_14 (Length: 314)
Name: NF20579_low_14
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 41244177 - 41244050
Alignment:
| Q |
174 |
gatgggtcctagctccttaacaaaacttcgttcattttccaatctgaaaacacatttattagcaaccacgaaatgtatgagcaaaacattactgcttttt |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41244177 |
gatgggtcctagctccttaacaaaacttcgttcattttccaatctgaaaacacatttattagcaaccacgaaatgtatgagcaaaacattactgcttttt |
41244078 |
T |
|
| Q |
274 |
cacctaataaataataaaatctcccttc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41244077 |
cacctaataaataataaaatctcccttc |
41244050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 41244332 - 41244237
Alignment:
| Q |
18 |
acactgagcatctttgtattttctacttaaattcaagcatataactgtctcgatcatttatggacctgtcacacaacataaatgggaatgtgggac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41244332 |
acactgagcatctttgtattttctacttaaattcaagcatataactgtctcgatcatttatggacctgtcacacaacataaatgggaatgtgggac |
41244237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University