View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20579_low_17 (Length: 257)
Name: NF20579_low_17
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 46219865 - 46219635
Alignment:
| Q |
10 |
attatactattatacatacaactctaaaaccattatccaactcttgattttgtccttccggcatcacactttacatccatttgtccttttgaaaaattca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46219865 |
attatactattatacatacaactctaaaaccattatccaactcttgattttgtccttccggcatcacactttacatccatttgtccttttgaaaaattca |
46219766 |
T |
|
| Q |
110 |
tgacataaaatattttgatgtcataaatcttcaaccaagcaaattaatgttcaggtgtagtattaaaaccatnnnnnnnttgtattaaaagctcaggaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46219765 |
tgacataaaatattttgatgtcataaatcttcaaccaagcaaattaatgttcaggtgtagtattaaaaccat-aaaaaattgtattaaaagctcaggaag |
46219667 |
T |
|
| Q |
210 |
acaacaaatccttttgccactttgaacaatat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
46219666 |
acaacaaatccttttgccactttgaacaatat |
46219635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University