View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20579_low_2 (Length: 537)
Name: NF20579_low_2
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_low_2 |
 | |
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| [»] scaffold0528 (2 HSPs) |
| | |
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Alignment Details
Target: scaffold0528 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: scaffold0528
Description:
Target: scaffold0528; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 213 - 523
Target Start/End: Complemental strand, 383 - 74
Alignment:
| Q |
213 |
tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatagcgaagagtcaatacagaaagatgatttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
383 |
tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatag-gaagagtctatacagaaagatgatttt |
285 |
T |
|
| Q |
313 |
tatttctatgaacatataatacaaggatagagtcttttattacaatattaatcatgaagactcacttaactataatactctatttccggtgacactcttc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
284 |
tatttctatgaacatataatacaaggatagagtcttttattacaatattaatcatgaagactcacttaactataatactctatttccggtgacactcttc |
185 |
T |
|
| Q |
413 |
aaagacctcatcatgcatgctttattttcttcacataaatatagcataacatgcaagttgaagatcacacgcattcaattcgcttcttagcaacaagaca |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
184 |
aaagacctcatcatgcatgctttattttcttcacataaatatagcataacatgcaagttcaagatcacacgcattcaattcgcttcttagcaacaagaca |
85 |
T |
|
| Q |
513 |
gagaggatttt |
523 |
Q |
| |
|
||||||||||| |
|
|
| T |
84 |
gagaggatttt |
74 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 625 - 414
Alignment:
| Q |
1 |
tttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttctgtgtgtagtacgcggtaacaatttccagatttcaatttgagtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
625 |
tttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttgtgtgtgtagtacgcggtaacaatttccagatttcaatttgagtat |
526 |
T |
|
| Q |
101 |
tatgtttttccagaattgtgggcatccaggagtaaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
525 |
tatgtttttccagaattgtgggcatacaggagtaaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttc |
426 |
T |
|
| Q |
201 |
attatgtgaata |
212 |
Q |
| |
|
|||||||||||| |
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|
| T |
425 |
attatgtgaata |
414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 213 - 523
Target Start/End: Original strand, 31038953 - 31039262
Alignment:
| Q |
213 |
tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatagcgaagagtcaatacagaaagatgatttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
31038953 |
tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatag-gaagagtctatacagaaagatgatttt |
31039051 |
T |
|
| Q |
313 |
tatttctatgaacatataatacaaggatagagtcttttattacaatattaatcatgaagactcacttaactataatactctatttccggtgacactcttc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31039052 |
tatttctatgaacatataatacaaggatagagtcttttattacaatattaatcatgaagactcacttaactataatactctatttccggtgacactcttc |
31039151 |
T |
|
| Q |
413 |
aaagacctcatcatgcatgctttattttcttcacataaatatagcataacatgcaagttgaagatcacacgcattcaattcgcttcttagcaacaagaca |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31039152 |
aaagacctcatcatgcatgctttattttcttcacataaatatagcataacatgcaagttcaagatcacacgcattcaattcgcttcttagcaacaagaca |
31039251 |
T |
|
| Q |
513 |
gagaggatttt |
523 |
Q |
| |
|
||||||||||| |
|
|
| T |
31039252 |
gagaggatttt |
31039262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 213 - 523
Target Start/End: Original strand, 31048176 - 31048485
Alignment:
| Q |
213 |
tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatagcgaagagtcaatacagaaagatgatttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
31048176 |
tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatag-gaagagtctatacagaaagatgatttt |
31048274 |
T |
|
| Q |
313 |
tatttctatgaacatataatacaaggatagagtcttttattacaatattaatcatgaagactcacttaactataatactctatttccggtgacactcttc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31048275 |
tatttctatgaacatataatacaaggatagagtcttttattacaatattaatcatgaagactcacttaactataatactctatttccggtgacactcttc |
31048374 |
T |
|
| Q |
413 |
aaagacctcatcatgcatgctttattttcttcacataaatatagcataacatgcaagttgaagatcacacgcattcaattcgcttcttagcaacaagaca |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31048375 |
aaagacctcatcatgcatgctttattttcttcacataaatatagcataacatgcaagttcaagatcacacgcattcaattcgcttcttagcaacaagaca |
31048474 |
T |
|
| Q |
513 |
gagaggatttt |
523 |
Q |
| |
|
||||||||||| |
|
|
| T |
31048475 |
gagaggatttt |
31048485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31038711 - 31038922
Alignment:
| Q |
1 |
tttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttctgtgtgtagtacgcggtaacaatttccagatttcaatttgagtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31038711 |
tttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttgtgtgtgtagtacgcggtaacaatttccagatttcaatttgagtat |
31038810 |
T |
|
| Q |
101 |
tatgtttttccagaattgtgggcatccaggagtaaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31038811 |
tatgtttttccagaattgtgggcatacaggagtaaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttc |
31038910 |
T |
|
| Q |
201 |
attatgtgaata |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31038911 |
attatgtgaata |
31038922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31047934 - 31048145
Alignment:
| Q |
1 |
tttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttctgtgtgtagtacgcggtaacaatttccagatttcaatttgagtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31047934 |
tttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttgtgtgtgtagtacgcggtaacaatttccagatttcaatttgagtat |
31048033 |
T |
|
| Q |
101 |
tatgtttttccagaattgtgggcatccaggagtaaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31048034 |
tatgtttttccagaattgtgggcatacaggagtaaagagcaacatcggcaaatttattggatagccgtcaacttattctagtcacttagttgtttgcttc |
31048133 |
T |
|
| Q |
201 |
attatgtgaata |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31048134 |
attatgtgaata |
31048145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 31033319 - 31033521
Alignment:
| Q |
1 |
tttacgaaccgaactgtat-cttgactaaccgagatgcccccataggcttggtttctgtgtgtagtacgcggtaacaatttccagatttcaatttgagta |
99 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
31033319 |
tttacgaaccgaactgttttctttactaaccgagatgcctccataggcttggtttgtgtgtgtagtacgtggtaacaatttccaaaattcaatttgagta |
31033418 |
T |
|
| Q |
100 |
ttatgtttttccagaattgtgggcatccaggagtaaagagcaacatcggcaaatttattggatagccgtcaacttattcta--gtcacttagttgtttgc |
197 |
Q |
| |
|
|||||||||| || |||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
31033419 |
ttatgtttttgcattattgcaggcatacaggagtaaagagcaacatcggcaaa-ttattggatagccgtcgacttattctatggtcacttagttgtttgc |
31033517 |
T |
|
| Q |
198 |
ttca |
201 |
Q |
| |
|
|||| |
|
|
| T |
31033518 |
ttca |
31033521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 56 - 215
Target Start/End: Original strand, 31052101 - 31052259
Alignment:
| Q |
56 |
tgtgtgtagtacgcggtaacaatttccagatttcaatttgagtattatgtttttccagaattgtgggcatccaggagtaaagagcaacatcggcaaattt |
155 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||||||||||| ||||||||| |||||||| ||||| |||| ||||||| |||||||||| |||| |
|
|
| T |
31052101 |
tgtgtgtagtacatggtaacaatttccaaaattcaatttgagtagtatgtttttgcagaattgcaggcatacaggcgtaaagaacaacatcggcgaatt- |
31052199 |
T |
|
| Q |
156 |
attggatagccgtcaacttattctagtcacttagttgtttgcttcattatgtgaatattt |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31052200 |
attggatagccgtcgacttattctagtcacttagttgtttgcttcataatgtgaatattt |
31052259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 458 - 523
Target Start/End: Original strand, 31052687 - 31052752
Alignment:
| Q |
458 |
ataacatgcaagttgaagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttt |
523 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31052687 |
ataacatgcaatttcaagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttt |
31052752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 31033895 - 31033966
Alignment:
| Q |
212 |
atttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaactatag |
284 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31033895 |
atttacagtttctctt-caaatcatcaaatactgagaggctgatttaatacaactttattgaaagaactatag |
31033966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 31052287 - 31052352
Alignment:
| Q |
213 |
tttaaagtttctctttcaaatcatcaaatactgagagactgatttaatacaactttattgaaagaa |
278 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31052287 |
tttacagtttctctttcaaatcatcaaatactgagaagctgatttaatacaactttattgaaagaa |
31052352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 387
Target Start/End: Original strand, 31052597 - 31052690
Alignment:
| Q |
294 |
aatacagaaagatgatttttatttctatgaacatataatacaaggatagagtcttttattacaatattaatcatgaagactcacttaactataa |
387 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||||||||||| | ||||||||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
31052597 |
aatacagcaagatgaattttatttctttgaacatataataccacattagagtcttttattataatattgaatatgaagactcacttaactataa |
31052690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 523
Target Start/End: Original strand, 31071488 - 31071584
Alignment:
| Q |
427 |
gcatgctttattttcttcacataaatatagcataacatgcaagttgaagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttt |
523 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| || || ||||||| || |||||||| | ||||||||||| ||| ||||||||||||| |
|
|
| T |
31071488 |
gcatgctttattttcttaggataaatataacataacttgaaaaacaaagatcaaacacattcaatcctcttcttagcaataaggcagagaggatttt |
31071584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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