View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20579_low_20 (Length: 228)
Name: NF20579_low_20
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 49246446 - 49246640
Alignment:
| Q |
16 |
attattctgatacttcccttgtcaccttaacgatgctttgcaaaagaagaatcttaacaccaaacaaaagaaaaacatctttcacgtttcatttcacctt |
115 |
Q |
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| T |
49246446 |
attattctgatacttcccttgtcaccttaacgatgctttgcaaaagaagaatcttaacaccaaacaaaagaaaaacatctttcacgtttcatttcacctt |
49246545 |
T |
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| Q |
116 |
tgacactaaagcatgccattaccattgccattgccattgccattactattactattaccatgtctttcttttctactctccgtcgatcctccttc |
210 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49246546 |
tgtcactaaagcatgccattaccattgccattgccattgccattactattactattaccatgtctttcttttctactctccgtcgatcctccttc |
49246640 |
T |
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