View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20579_low_22 (Length: 227)
Name: NF20579_low_22
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_low_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2098407 - 2098181
Alignment:
| Q |
1 |
tcatcatcataaccatcatccctaatatctgaagaaccacctccaaacctatcagaccatgaaccattccttctatactctctattaccccaatcaaatc |
100 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2098407 |
tcatcatcataaccatcatccttaatatccgaagaaccacctccaaacctatcagaccatgatccattccttctatactctctattaccccaatcaaatc |
2098308 |
T |
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| Q |
101 |
cattactattaaaactccctctcctcctaccacctcccttttgtccaaactcttcaaaccctatattcctcctcccagacaacccttcatccacaactgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2098307 |
cattactattaaaactccctctcctcctaccacctcccttttgtccaaattcttcaaaccctatattcctcctcccagacaacccttcatccacaactgg |
2098208 |
T |
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| Q |
201 |
tcccagcgcattattccccaatcgcgc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2098207 |
tcccagcgcattattccccaatcgcgc |
2098181 |
T |
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