View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20579_low_23 (Length: 215)

Name: NF20579_low_23
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20579_low_23
NF20579_low_23
[»] chr2 (19 HSPs)
chr2 (13-200)||(30789101-30789288)
chr2 (13-200)||(30067043-30067230)
chr2 (13-200)||(30120177-30120364)
chr2 (13-200)||(30134875-30135062)
chr2 (42-200)||(30250786-30250944)
chr2 (44-195)||(30112999-30113150)
chr2 (42-195)||(30170061-30170214)
chr2 (44-195)||(30028465-30028616)
chr2 (13-200)||(30056297-30056484)
chr2 (44-195)||(30091146-30091297)
chr2 (44-195)||(30101464-30101615)
chr2 (44-195)||(30127751-30127902)
chr2 (42-189)||(30185744-30185891)
chr2 (44-195)||(30222603-30222754)
chr2 (13-148)||(30021827-30021962)
chr2 (13-148)||(30038733-30038868)
chr2 (13-148)||(30080233-30080368)
chr2 (13-148)||(30108211-30108346)
chr2 (13-148)||(30232871-30233006)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 30789101 - 30789288
Alignment:
Q  13 aacctgtggggtgaaaaggttcactttgataaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttac 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30789101 aacctatggggtgaaaaggttcactttgataaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttac 30789200  T
Q  113 aatcttcctgagaagctggagtgcccagagctgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatgacttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30789201 aatcttcctgagaagctggagtgcccagagctgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatgacttct 30789288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 30067043 - 30067230
Alignment:
Q  13 aacctgtggggtgaaaaggttcactttgataaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttac 112  Q
    ||||| ||| ||| |||||||| ||||||||||||| ||||||| |||||||||  | |||||||| ||||| |||| ||| | ||||||| ||||||||    
T  30067043 aacctatggtgtgcaaaggttcgctttgataaaacagtggccagagatagatcagctccaaaaatgccatcagatcagtctgcattggtcttatatttac 30067142  T
Q  113 aatcttcctgagaagctggagtgcccagagctgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatgacttct 200  Q
    ||||||||||||||| |||||||||||||| |||   ||||| ||||| ||||||||||||| ||||| ||| || | ||||||||||    
T  30067143 aatcttcctgagaagatggagtgcccagagttgactctacttatacttgaaaatataggtgagtatttaaaaatctccgatgacttct 30067230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 30120364 - 30120177
Alignment:
Q  13 aacctgtggggtgaaaaggttcactttgataaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttac 112  Q
    ||||| |||||||||||||| ||||    |||| |||||||| | ||| ||| |  |||||||||| ||||| ||||| || ||||||||| ||||||||    
T  30120364 aacctatggggtgaaaaggtacactaaagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttatatttac 30120265  T
Q  113 aatcttcctgagaagctggagtgcccagagctgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatgacttct 200  Q
    || |||||||||||| || ||||||||||| ||||| |||| |  ||||| |||||||| ||||||||||||||||| ||||||||||    
T  30120264 aagcttcctgagaagttgaagtgcccagagttgaagctactgcagcttcagaatataggagattatttgaaagtccccgatgacttct 30120177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 30135062 - 30134875
Alignment:
Q  13 aacctgtggggtgaaaaggttcactttgataaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttac 112  Q
    ||||| |||||||||||||| ||||    |||| |||||||| | ||| ||| |  |||||||||| ||||| ||||| || |||||||||  |||||||    
T  30135062 aacctatggggtgaaaaggtacactaaagtaaatcaatggcctgggatggatgagcttcaaaaatgccatcagatcatccttccttggtcttttatttac 30134963  T
Q  113 aatcttcctgagaagctggagtgcccagagctgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatgacttct 200  Q
    || |||||||||||| || ||||||||||| ||||| |||| |  ||||| |||||||| ||||||||||||||||| ||||||||||    
T  30134962 aagcttcctgagaagttgaagtgcccagagttgaagctactgcagcttcagaatataggagattatttgaaagtccccgatgacttct 30134875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 30250786 - 30250944
Alignment:
Q  42 taaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttacaatcttcctgagaagctggagtgcccaga 141  Q
    ||||||||||||||| ||| |||||| |   |||||| ||||| || ||  | ||||||||  |||||||||| |||||||| |||||||||||||||||    
T  30250786 taaaacaatggccagagatggatcaactaagaaaatgccatcagataatcattccttggtcatatatttacaagcttcctgaaaagctggagtgcccaga 30250885  T
Q  142 gctgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatgacttct 200  Q
    ||| ||| |||| |||||||| ||||||| ||| | |||||||||||||||||||||||    
T  30250886 gctaaagctactactacttcataatatagatgactttttgaaagtccctgatgacttct 30250944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 30112999 - 30113150
Alignment:
Q  44 aaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttacaatcttcctgagaagctggagtgcccagagc 143  Q
    |||||||||||| ||||||||||  ||||||| |  |||||||||||| | ||||||||| ||||| |  | |||||||||||| ||||||||||||||     
T  30112999 aaacaatggccaatgatagatcagcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagt 30113098  T
Q  144 tgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatga 195  Q
    ||| | ||||||||||||| |||||||| ||  ||||||||||| |||||||    
T  30113099 tgaggctacttctacttcataatataggcgacaatttgaaagtctctgatga 30113150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 30170061 - 30170214
Alignment:
Q  42 taaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttacaatcttcctgagaagctggagtgcccaga 141  Q
    ||||||||||||||| |||||| ||  |||||||||| |||||||||||| | ||||||||| ||||| |  | |||||||||||| ||||||| |||||    
T  30170061 taaaacaatggccagagatagaccagcttcaaaaatgccatcaaatcattttcccttggtcttatattgaagagcttcctgagaagttggagtgtccaga 30170160  T
Q  142 gctgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatga 195  Q
    | ||||  ||||  | ||||||| |||||||||| |||||||| ||||||||||    
T  30170161 gttgaaactactcgttcttcaaactataggtgatcatttgaaaatccctgatga 30170214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 30028465 - 30028616
Alignment:
Q  44 aaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttacaatcttcctgagaagctggagtgcccagagc 143  Q
    ||||||||||||  |||||||||  ||||||| |  |||||||||||| | ||||||||| ||||| |  | |||||||||||| ||||||||||||||     
T  30028465 aaacaatggccaacgatagatcagcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagt 30028564  T
Q  144 tgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatga 195  Q
    ||| | ||||||||||||| |||||||| ||  ||||||||||| |||||||    
T  30028565 tgaggctacttctacttcataatataggcgacaatttgaaagtctctgatga 30028616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 30056297 - 30056484
Alignment:
Q  13 aacctgtggggtgaaaaggttcactttgataaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttac 112  Q
    ||||| |||||||||||||| ||||    |||| |||||||| | ||| ||| |  ||| |||||| ||||| ||||| ||  |||||||| ||||||||    
T  30056297 aacctatggggtgaaaaggtacactaaagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttacttggtcttatatttac 30056396  T
Q  113 aatcttcctgagaagctggagtgcccagagctgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatgacttct 200  Q
    || |||||||||||||||| ||| ||| || || || |||||| |||| |||||||||||||| ||||| ||||||| ||||||||||    
T  30056397 aagcttcctgagaagctggtgtgtccaaagttggagctacttcaacttgaaaatataggtgataatttggaagtccccgatgacttct 30056484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 30091146 - 30091297
Alignment:
Q  44 aaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttacaatcttcctgagaagctggagtgcccagagc 143  Q
    ||||||||||||  |||||||||  ||||||| |  |||||||||||| | ||||||||| ||||| |  | |||||||||||| ||||||||||||||     
T  30091146 aaacaatggccaacgatagatcagcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagt 30091245  T
Q  144 tgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatga 195  Q
    ||| | ||||||||||||| |||||||| ||  ||||||||||| |||||||    
T  30091246 tgaggctacttctacttcataatataggcgacaatttgaaagtctctgatga 30091297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 30101464 - 30101615
Alignment:
Q  44 aaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttacaatcttcctgagaagctggagtgcccagagc 143  Q
    ||||||||||||  |||||||||  ||||||| |  |||||||||||| | ||||||||| ||||| |  | |||||||||||| ||||||||||||||     
T  30101464 aaacaatggccaacgatagatcagcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagt 30101563  T
Q  144 tgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatga 195  Q
    ||| | ||||||||||||| |||||||| ||  ||||||||||| |||||||    
T  30101564 tgaggctacttctacttcataatataggcgacaatttgaaagtctctgatga 30101615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 30127751 - 30127902
Alignment:
Q  44 aaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttacaatcttcctgagaagctggagtgcccagagc 143  Q
    ||||||||||||  |||||||||  ||||||| |  |||||||||||| | ||||||||| ||||| |  | |||||||||||| ||||||||||||||     
T  30127751 aaacaatggccaacgatagatcagcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagt 30127850  T
Q  144 tgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatga 195  Q
    ||| | ||||||||||||| |||||||| ||  ||||||||||| |||||||    
T  30127851 tgaggctacttctacttcataatataggcgacaatttgaaagtctctgatga 30127902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 42 - 189
Target Start/End: Complemental strand, 30185891 - 30185744
Alignment:
Q  42 taaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttacaatcttcctgagaagctggagtgcccaga 141  Q
    ||||||||||||||| ||| ||| |  ||| |||||| ||||| |||||  | ||||||||| |||||||||| |||||||||||||||| ||| ||| |    
T  30185891 taaaacaatggccagggatggatgagcttcgaaaatgccatcagatcatcttgccttggtcttatatttacaagcttcctgagaagctggtgtgtccaaa 30185792  T
Q  142 gctgaagttacttctacttcaaaatataggtgattatttgaaagtccc 189  Q
    | || || |||||| |||| |||||||||||||||||||| |||||||    
T  30185791 gttggagctacttcaacttgaaaatataggtgattatttggaagtccc 30185744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 30222603 - 30222754
Alignment:
Q  44 aaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttacaatcttcctgagaagctggagtgcccagagc 143  Q
    ||||||||||||  |||||||||  ||||||| |  |||||||||||| | ||||||||| ||||| |  | |||||||||||| ||||||||||||||     
T  30222603 aaacaatggccaaagatagatcagcttcaaaagttccatcaaatcattttgccttggtcttatattaatgagcttcctgagaagttggagtgcccagagt 30222702  T
Q  144 tgaagttacttctacttcaaaatataggtgattatttgaaagtccctgatga 195  Q
    ||| | ||||||||||||| |||||||| ||  ||||||||||| |||||||    
T  30222703 tgaggctacttctacttcataatataggcgacaatttgaaagtctctgatga 30222754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 30021827 - 30021962
Alignment:
Q  13 aacctgtggggtgaaaaggttcactttgataaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttac 112  Q
    ||||| |||||||||||||| ||||    |||| |||||||| | ||| ||| |  ||| |||||| ||||| ||||| || ||||||||| ||||||||    
T  30021827 aacctatggggtgaaaaggtacactaaagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttccttggtcttatatttac 30021926  T
Q  113 aatcttcctgagaagctggagtgcccagagctgaag 148  Q
    || |||||||||||| || ||||||||||| |||||    
T  30021927 aagcttcctgagaagttgaagtgcccagagttgaag 30021962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 30038868 - 30038733
Alignment:
Q  13 aacctgtggggtgaaaaggttcactttgataaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttac 112  Q
    ||||| |||||||||||||| ||||    |||| |||||||| | ||| ||| |  ||| |||||| ||||| ||||| || ||||||||| ||||||||    
T  30038868 aacctatggggtgaaaaggtacactaaagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttccttggtcttatatttac 30038769  T
Q  113 aatcttcctgagaagctggagtgcccagagctgaag 148  Q
    || |||||||||||| || ||||||||||| |||||    
T  30038768 aagcttcctgagaagttgaagtgcccagagttgaag 30038733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 30080233 - 30080368
Alignment:
Q  13 aacctgtggggtgaaaaggttcactttgataaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttac 112  Q
    ||||| |||||||||||||| ||||    |||| |||||||| | ||| ||| |  ||| |||||| ||||| ||||| || ||||||||| ||||||||    
T  30080233 aacctatggggtgaaaaggtacactaaagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttccttggtcttatatttac 30080332  T
Q  113 aatcttcctgagaagctggagtgcccagagctgaag 148  Q
    || |||||||||||| || ||||||||||| |||||    
T  30080333 aagcttcctgagaagttgaagtgcccagagttgaag 30080368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 30108346 - 30108211
Alignment:
Q  13 aacctgtggggtgaaaaggttcactttgataaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttac 112  Q
    ||||| |||||||||||||| ||||    |||| |||||||| | ||| ||| |  ||| |||||| ||||| ||||| || ||||||||| ||||||||    
T  30108346 aacctatggggtgaaaaggtacactaaagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttccttggtcttatatttac 30108247  T
Q  113 aatcttcctgagaagctggagtgcccagagctgaag 148  Q
    || |||||||||||| || ||||||||||| |||||    
T  30108246 aagcttcctgagaagttgaagtgcccagagttgaag 30108211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 30233006 - 30232871
Alignment:
Q  13 aacctgtggggtgaaaaggttcactttgataaaacaatggccagtgatagatcaaattcaaaaatgtcatcaaatcattctaccttggtctaatatttac 112  Q
    ||||| |||||||||||||| ||||    |||| |||||||| | ||| ||| |  ||| |||||| ||||| ||||| || ||||||||| ||||||||    
T  30233006 aacctatggggtgaaaaggtacactaaagtaaatcaatggcctgggatggatgagcttcgaaaatgccatcagatcatccttccttggtcttatatttac 30232907  T
Q  113 aatcttcctgagaagctggagtgcccagagctgaag 148  Q
    || |||||||||||| || ||||||||||| |||||    
T  30232906 aagcttcctgagaagttgaagtgcccagagttgaag 30232871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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