View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20579_low_5 (Length: 425)
Name: NF20579_low_5
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 2 - 407
Target Start/End: Original strand, 42118689 - 42119093
Alignment:
| Q |
2 |
ccaccaccacaacacaata-cacccttttcacactaacatcaatatttgtacaccctaacctaacctatactttccccaccttatatatacaacccttct |
100 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42118689 |
ccaccaccacaacacaataacacccttttcccactaacatcaatatttgtacaccctaacctaacctatactttcccgaccttatatatacaacccttct |
42118788 |
T |
|
| Q |
101 |
catatcctcttcatcattccnnnnnnngttgttatgtattttgttttccatctatcatgagcaatatcccaaaatctctcaccgactcttccttaactct |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42118789 |
catatcctcttcatcattcctttttt-gttgttatgtattttgttttccatctatcatgagcaatatcccaaaatctctcaccgactcttccttaactct |
42118887 |
T |
|
| Q |
201 |
cttcaatctcaccatatcatcttctgatccttggcctttctcttttgttttcttataacaaaaaacctcccaaaaccaattaatcattgtttaaccacta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42118888 |
cttcaatctcaccatatcatcttctgatccttggcctttctcttttgttttcttataacaaaaaacctcccaaaaccaattaatcattgtttaaccacta |
42118987 |
T |
|
| Q |
301 |
cttgaagtgcattcaatacacttctttattgttgtttccttcaactttgtgggtttgttattcttgttaattatggggattagtagtaatcatcataacc |
400 |
Q |
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|||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42118988 |
cttgaagtacattcaatacacttc-ttgttgttgtttccttcaactttgtgggtttgttattcttgttaattatggggattagtagtaatcatcataacc |
42119086 |
T |
|
| Q |
401 |
atcactt |
407 |
Q |
| |
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||||||| |
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| T |
42119087 |
atcactt |
42119093 |
T |
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