View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20579_low_6 (Length: 411)
Name: NF20579_low_6
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_low_6 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 12073752 - 12074140
Alignment:
| Q |
1 |
gattcttctagtaggattatacttttctaatttcatgtttagtaaagnnnnnnntgtttagtaaatgtttacagaaaagcaaagccaaacaagtggttga |
100 |
Q |
| |
|
|||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
12073752 |
gatttttccagtaggattgtacttttctaatttcatgtttagtaaagaaaaaaatgtttagtaaatgtttacagaaa------gccaaacaagtggttga |
12073845 |
T |
|
| Q |
101 |
agaaggcacaattaaaagcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
12073846 |
agaaggcacaattaaaagcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactattctt |
12073945 |
T |
|
| Q |
201 |
tatggtctttgcaacttttttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
12073946 |
tatggtctttgcaacttttttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatgcttatgtaacttataatgtgatgtt |
12074045 |
T |
|
| Q |
301 |
gattataaagaatttgctacgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacatac |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12074046 |
gattataaagaatttgctacgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacatac |
12074140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 390
Target Start/End: Original strand, 12046556 - 12046931
Alignment:
| Q |
10 |
agtaggattatacttttctaatttcatgtttagtaaagnnnnnnntgtttagtaaatgtttacagaaaagcaaagccaaacaagtggttgaagaaggcac |
109 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12046556 |
agtaggattgtaattttctaatttcatgtttagtaaagaaaaaaatgtttagtaaatgtttacagaaaagcaaagccaaacaagtggttgaagaaggcac |
12046655 |
T |
|
| Q |
110 |
aattaaaagcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctt |
209 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| |
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|
| T |
12046656 |
aattaaaagcaaaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagtcaacttttatatactactattctttatggtctt |
12046755 |
T |
|
| Q |
210 |
tgcaacttttttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaa |
309 |
Q |
| |
|
||| ||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||| ||| |||||||||||| |
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|
| T |
12046756 |
tgccacttttttcctcaaccctgtttcagttaaattatgagatttctaaatatcaatttaagaatgctcatgtaacttataatatgaggttgattataaa |
12046855 |
T |
|
| Q |
310 |
gaatttgctacgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtgga |
390 |
Q |
| |
|
||| ||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
12046856 |
gaa-----tacgttggaaaagtgatcttatataggcagttgtctgaaaataatctcaattattggatcataagatggtgga |
12046931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 118 - 394
Target Start/End: Original strand, 12050906 - 12051181
Alignment:
| Q |
118 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaactt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||| || | |
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|
| T |
12050906 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaaatgagccaacttttatatactactattctttatggtctctgccacgt |
12051005 |
T |
|
| Q |
218 |
ttttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgc |
317 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||| | |
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|
| T |
12051006 |
ttttcctcaactttgttgcagttcaattatgatatttctaaatatcattttaagaatgcttatgtaacttataatgtgaggttgattataaag-attttc |
12051104 |
T |
|
| Q |
318 |
tacgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacata |
394 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
12051105 |
tacgttggaaaattgatcttatacaagtaattgtctgaaaataatatcaattattggatcataagatggtggacata |
12051181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 118 - 393
Target Start/End: Original strand, 12066363 - 12066637
Alignment:
| Q |
118 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaactt |
217 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||| ||||| ||| |||||||||||||| |||||||||||||| || |||| |||||||||||| | || |
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|
| T |
12066363 |
gcagaaggtttgaaatcgtattgaaaa-gtgaataatctaacagagttaaaaattgagtcaacttttatatactacgattctatatggtctttgccattt |
12066461 |
T |
|
| Q |
218 |
ttttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgc |
317 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
12066462 |
ttttcctcaactttgtttcaattcaattatgatatttctaaatatcaatttaagaatgcttatgtaacttataatatgaggttgattataaagaatttgc |
12066561 |
T |
|
| Q |
318 |
tacgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacat |
393 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
12066562 |
tacgttggaaaattgatcttatacaagtagttgtctgaaaataatctcaattattggaacataagagggtggacat |
12066637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 10 - 395
Target Start/End: Original strand, 12058111 - 12058494
Alignment:
| Q |
10 |
agtaggattatacttttctaatttcatgtttagtaaagnnnnnnntgtttagtaaatgttt-acagaaaagcaaagccaaacaagtggttgaagaaggca |
108 |
Q |
| |
|
||||||||| || |||||| |||||||||| ||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||| | |
|
|
| T |
12058111 |
agtaggattgta-ttttcttatttcatgttgagtaaagaaaaaaatgtttagtcaatgtttcatagaaaagcaaagccaaacaagtggttgaagaaggta |
12058209 |
T |
|
| Q |
109 |
c--aat------taaaagcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctt |
200 |
Q |
| |
|
||| | || |||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||| | ||||| |
|
|
| T |
12058210 |
tgtaatgctgcttgaaggcagaaggtatgaaatcatattgaaaaagtgaacaatcccatacagtcaaaa-ttgagccaacttttatataccaatattctt |
12058308 |
T |
|
| Q |
201 |
tatggtctttgcaacttttttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgtt |
300 |
Q |
| |
|
|||||||| | | ||||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||| |
|
|
| T |
12058309 |
tatggtctctaccactttttg---------tgtttcagttcaattatgatatttctaaatatcaatttatgaatgcttatgtaacttataatgtgaggtt |
12058399 |
T |
|
| Q |
301 |
gattataaagaatttgctacgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacatac |
395 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||| ||||||| |
|
|
| T |
12058400 |
gattataaagaatttgctacgctggaaaagtgatcttatataagtagttgtctgaaaaaaatatcaattattggatcataatatggttgacatac |
12058494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 118 - 371
Target Start/End: Original strand, 12053434 - 12053686
Alignment:
| Q |
118 |
gcagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||| || |||| |
|
|
| T |
12053434 |
gcagaaggtatgaaatcatattgaaaaagtaaacaatctcacacagttaaaaattgagtcaacttttatatggtactattctttata-tctccgccactt |
12053532 |
T |
|
| Q |
218 |
ttttcttcaactttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgc |
317 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
12053533 |
ttttcctcaaccttgtttcagtttaattatgagatttctaaatatcaatttaagaatgcttatgtaacatataatgtgaggttgattataaagaatttgc |
12053632 |
T |
|
| Q |
318 |
tacgttggaaaagtgatcttatataagtagttgtctgaaaataatcttaattat |
371 |
Q |
| |
|
|| |||| |||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
12053633 |
taagttgaaaaagtgatcttatgcaagtagttgtctgaaaataatctcaattat |
12053686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 127 - 395
Target Start/End: Original strand, 12063790 - 12064042
Alignment:
| Q |
127 |
atgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaacttttttcttca |
226 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||| ||| || |||||||| ||| |
|
|
| T |
12063790 |
atgaaattatattgaaaaagcgaacaatctcata--gttaaatattgagccaacttttatataccactattctttatgatctccgccactttttttctca |
12063887 |
T |
|
| Q |
227 |
actttgtttcagttcaattatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgctacgttgga |
326 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
12063888 |
actttgtttcaattcaattatgagatttctaaatatcaatttaagaatgctta--------------tgaggttgattgtaaagaatttgctgcgttgga |
12063973 |
T |
|
| Q |
327 |
aaagtgatcttatataagtagttgtctgaaaataatcttaattattggatcataagatggtggacatac |
395 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
12063974 |
aaagtaatcttatatgagcagttgtctgaaaataatctcaattattggatcattagatggtggacatac |
12064042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 12050755 - 12050855
Alignment:
| Q |
11 |
gtaggattatacttttctaatttcatgtttagtaaagnnnnnnntgtttagtaaatgttt-acagaaaagcaaagccaaacaagtggttgaagaaggcac |
109 |
Q |
| |
|
|||||||| || ||||| ||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12050755 |
gtaggattgtaattttccaatttcatgttccgtaaaggaaaaaatgtttagtgaatgttttacagaaaagcaaagccaaacaagtggttggagaaggcac |
12050854 |
T |
|
| Q |
110 |
a |
110 |
Q |
| |
|
| |
|
|
| T |
12050855 |
a |
12050855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 119 - 329
Target Start/End: Complemental strand, 30353724 - 30353515
Alignment:
| Q |
119 |
cagaaggtatgaaatcatattgaaaaagtgaacaatctcacacagttaaaaattgagccaacttttatataccactgttctttatggtctttgcaacttt |
218 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| || | |||||||||||||||||| |||||||| |||| ||||||||||||| ||| |||| |
|
|
| T |
30353724 |
cagaaggtatgaaattatattgaaaaggtgaacaatcccata--gttaaaaattgagccaacctttatatatcactattctttatggtctctgccacttg |
30353627 |
T |
|
| Q |
219 |
tttcttcaactttgtttcagttcaa-ttatggtatttctaaatatcaatttaagaatacttatgtaacttataatgtgatgttgattataaagaatttgc |
317 |
Q |
| |
|
| || ||||| ||||||||||||| || | |||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||| ||| |
|
|
| T |
30353626 |
tctcctcaaccctgtttcagttcaattttttagatttctaaatatcaatttaagaattcttatgtaacttataatttcaggttgattataaagaatctgc |
30353527 |
T |
|
| Q |
318 |
tacgttggaaaa |
329 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30353526 |
tacgttggaaaa |
30353515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 1249 - 1213
Alignment:
| Q |
344 |
gtagttgtctgaaaataatcttaattattggatcata |
380 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
1249 |
gtagttgtctgaacataatcttaattatttgatcata |
1213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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