View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20579_low_7 (Length: 404)
Name: NF20579_low_7
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 390
Target Start/End: Original strand, 46788468 - 46788849
Alignment:
| Q |
5 |
atatacaagaaattaatgcttaattctctgggagcaaacttaagctaaccatagtaatagttttatgtggttttcttgagcaaattggatgtttttgttg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46788468 |
atatacaagaaattaatgcttaattctctgggagcaaactcaatctaaccatagtaatagttttatgtggttttcttgagcaaattggatgttattgttg |
46788567 |
T |
|
| Q |
105 |
agatgtcatgacctctcccttgcattactttcttttcttttcttctcaattcaattgaaactccttctcgtgcagatactgctttaaggatttacaatgg |
204 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46788568 |
agatgtcatgacctctcccttgcattagattcttttcttttcttctcaattcaattgaaattccttctcatgcagatactgctttaaggatttacaatgg |
46788667 |
T |
|
| Q |
205 |
atcgatggatataattaaggtatgtaattcagttatgggtccaattacaaagttttcagtttaggcactatttaaaactcacttaataattttgaaattt |
304 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46788668 |
at----ggatataattaaggtatgtaattcagttatgggtccaattacaaagttttcagtttaggcactatttaaaactcacttaataattttgaaattt |
46788763 |
T |
|
| Q |
305 |
catgagttagtaaacttaattattttttattaaaagataaaatcaaaataaagagataaagttgatgctatcaattagacatttgt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46788764 |
catgagttagtaaacttaattattttttattaaaatataaaatcaaaataaagagataaagttgatgctatcaattagacatttgt |
46788849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 46781065 - 46781287
Alignment:
| Q |
5 |
atatacaagaaattaatgcttaattctctgggagcaaacttaagctaaccatagtaatagttttatgtggttttcttgagcaaattggatgtttttgt-- |
102 |
Q |
| |
|
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46781065 |
atatacaagaaattaaggtttaattccgcgggagcaaacttaagctaaccatagtaatagttttatgtggttttcttgagcaaattggatgttattgttg |
46781164 |
T |
|
| Q |
103 |
-------------------tgagatgtcatgacctctcccttgcattactttcttttcttttcttctcaattcaattgaaactccttctcgtgcagatac |
183 |
Q |
| |
|
|||||||||| |||| |||||||||| || ||||| |||||||||||||||||||| ||||| | |||||| ||||||||| |
|
|
| T |
46781165 |
acacattcttgtcagctggtgagatgtcaggaccactcccttgcaatagtttctcttcttttcttctcaattcaagtgaaatttcttctcatgcagatac |
46781264 |
T |
|
| Q |
184 |
tgctttaaggatttacaatggat |
206 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46781265 |
tgctttaaggatttacaatggat |
46781287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University