View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20579_low_8 (Length: 395)
Name: NF20579_low_8
Description: NF20579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20579_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 382
Target Start/End: Original strand, 46256518 - 46256891
Alignment:
| Q |
9 |
acatcatcaatatccagaccctgcgctgccacaacgtggcaactaatgtcatgaatttcccagacctgaagccagacaaagtagcctgccagtgacagga |
108 |
Q |
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| T |
46256518 |
acatcattaatatacagatcctgcgctgccacaacgtggcaactaatgtcatgaatttcccagacctgaagccagacaaagtagcctgccagtgacagga |
46256617 |
T |
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| Q |
109 |
tacaatcaaaagagagaattgnnnnnnngaaacatatcaagttcataagtattctgaagtttcaactataacaaaattcattaatatctcacctcgtgtt |
208 |
Q |
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| T |
46256618 |
tacaatcaaaagagaaaattgaaaaaaagaaacatatcaagttcataagtattctgaagtttcaactataacaaaattcattaatatctcacctcacgtt |
46256717 |
T |
|
| Q |
209 |
gtgcttgctgaatgtcaccattgagagctcttgctccatacaacaactctgcaagctgagatgctgattcctttgtctcagtgaatataattgtttgacc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46256718 |
gtgcttgctgaatgtcaccattgagagctcttgctccatgcaacaactctgcaagctgagatgctgattcctttgtctcagtaaatataattgtttgacc |
46256817 |
T |
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| Q |
309 |
ttcactgaattagaacagtgtagcgaaacaatcaagatttaaatttcacatgaagatttatcttatgtgaatat |
382 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
46256818 |
ttcactgaattagaacagtgtagcaaaacaatcaagatttaaattccacaagaagatttatcttatgtgaatat |
46256891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 171 - 382
Target Start/End: Original strand, 46247046 - 46247257
Alignment:
| Q |
171 |
caactataacaaaattcattaatatctcacctcgtgttgtgcttgctgaatgtcaccattgagagctcttgctccatacaacaactctgcaagctgagat |
270 |
Q |
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| T |
46247046 |
caactataacaaacttcattaatagctcacctcgcgttgtgcttgttgtatgtcaccatggagagctcttgctccaggcaacaactctgcaagctgagat |
46247145 |
T |
|
| Q |
271 |
gctgattcctttgtctcagtgaatataattgtttgaccttcactgaattagaacagtgtagcgaaacaatcaagatttaaatttcacatgaagatttatc |
370 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||||||| |
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| T |
46247146 |
gctgattcctttgtctcagtgaatataattgttcgaccttcactgaattagaacagtgtaccgaaacaatgaagatttaaattcaacaggaagatttatc |
46247245 |
T |
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| Q |
371 |
ttatgtgaatat |
382 |
Q |
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||||||||||| |
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| T |
46247246 |
atatgtgaatat |
46247257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 46246837 - 46246929
Alignment:
| Q |
17 |
aatatccagaccctgcgctgccacaac-gtggcaactaatgtcatgaatttcccagacctgaagccagacaaagtagcctgccagtgacagga |
108 |
Q |
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||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |
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| T |
46246837 |
aatatccagaccccgtgctgccacatttgtggcaactaatgtcatgaatttcccatacctgaagccagacaaagtaacctgcaagtgacagga |
46246929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 20121535 - 20121641
Alignment:
| Q |
196 |
ctcacctcgtgttgtgcttgctgaatgtcaccattgagagctcttgctccatacaacaactctgcaagctgagatgctgattcctttgtctcagtgaata |
295 |
Q |
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|||||||| |||||| ||||| |||||||||| |||||||||||||||| |||||| | ||||||| ||| || || |||||| |||| | |||| |
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| T |
20121535 |
ctcacctcacgttgtgactgctgtatgtcaccatggagagctcttgctccaggcaacaatccagcaagctcagaagcagactcctttttctccgcaaata |
20121634 |
T |
|
| Q |
296 |
taattgt |
302 |
Q |
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||||||| |
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| T |
20121635 |
taattgt |
20121641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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