View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_high_12 (Length: 444)
Name: NF2057_high_12
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 8175080 - 8174669
Alignment:
| Q |
18 |
caaatgtgacttaaattataaaatgtatgcacaagctaagcatatagttgacatgtaagtatcaaaatcaaaattttaaaacattatgacaccatcatac |
117 |
Q |
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| T |
8175080 |
caaatgtgacttaaattataaaatgtatgcacaagctaagcatatagttgacatgtaagtatcgcaaccaaaattttaaaacattatgacaccatcattc |
8174981 |
T |
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| Q |
118 |
taacctcatgtttagcgcatgatcccattttgcatatagctttgttnnnnnnngtcacatatatttgtttattttaccacaacaattaaacctaattgtt |
217 |
Q |
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| T |
8174980 |
taacctcatgtttagcgcatgatcccattttgcatatagctttgttaaaaaaagtcacatatatttgtttattttaccacaagaattaaacctaattgtt |
8174881 |
T |
|
| Q |
218 |
tattgaaagcacgaatcttcttaaaacctatttgctttaatcatttcgttatcaatagggattagttgagatgaattgatttgtacataactacatacat |
317 |
Q |
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| T |
8174880 |
tattgaaagcacgaatcttcttaaaacctatttgctttaatcatttcgttatcaatagggattagttgagatgaattgatttgtacataa----gtacat |
8174785 |
T |
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| Q |
318 |
attcaacatatttggtttgaagtttgatttttgtaatgaagtggttctcaatttaattttctattatatttgttaactaataccaacattaatttaagaa |
417 |
Q |
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| T |
8174784 |
attcaacatatctgg-ttgaagtttgatttttgtaatgaagtggttctcaatttaattttctattatatttgttaactaataccaacattaatttaagaa |
8174686 |
T |
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| Q |
418 |
ttatcccaccagtataa |
434 |
Q |
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| T |
8174685 |
ttatcccaccaatataa |
8174669 |
T |
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