View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2057_high_13 (Length: 425)

Name: NF2057_high_13
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2057_high_13
NF2057_high_13
[»] chr3 (12 HSPs)
chr3 (1-416)||(25795327-25795735)
chr3 (383-417)||(3328487-3328521)
chr3 (383-417)||(3716133-3716167)
chr3 (383-417)||(26298910-26298944)
chr3 (383-417)||(40592914-40592948)
chr3 (191-276)||(15072711-15072796)
chr3 (385-417)||(8370618-8370650)
chr3 (385-417)||(27026869-27026901)
chr3 (385-417)||(27038214-27038246)
chr3 (338-370)||(28531019-28531051)
chr3 (385-417)||(35925406-35925438)
chr3 (385-417)||(48438138-48438170)
[»] scaffold0488 (1 HSPs)
scaffold0488 (189-252)||(2356-2419)
[»] chr1 (10 HSPs)
chr1 (383-417)||(47098965-47098999)
chr1 (383-417)||(47102982-47103016)
chr1 (383-415)||(32889360-32889392)
chr1 (383-417)||(775594-775628)
chr1 (383-417)||(19072849-19072883)
chr1 (383-417)||(19120739-19120773)
chr1 (383-417)||(27104513-27104547)
chr1 (383-417)||(47704077-47704111)
chr1 (166-219)||(22166118-22166171)
chr1 (385-417)||(29651735-29651767)
[»] chr8 (4 HSPs)
chr8 (342-379)||(11492038-11492075)
chr8 (378-417)||(9765961-9766000)
chr8 (383-417)||(26403371-26403405)
chr8 (342-371)||(33727838-33727867)
[»] chr6 (7 HSPs)
chr6 (383-419)||(5572735-5572771)
chr6 (383-417)||(4629875-4629909)
chr6 (383-417)||(10077306-10077340)
chr6 (385-417)||(5017609-5017641)
chr6 (385-417)||(18232769-18232801)
chr6 (385-417)||(22963624-22963656)
chr6 (385-417)||(23824737-23824769)
[»] scaffold0148 (1 HSPs)
scaffold0148 (383-417)||(10651-10685)
[»] chr7 (3 HSPs)
chr7 (383-417)||(4796808-4796842)
chr7 (383-417)||(20284011-20284045)
chr7 (383-417)||(29159725-29159759)
[»] chr5 (5 HSPs)
chr5 (383-417)||(19588668-19588702)
chr5 (383-417)||(31300737-31300771)
chr5 (384-417)||(28832182-28832215)
chr5 (385-417)||(12084317-12084349)
chr5 (342-370)||(32670593-32670621)
[»] chr4 (4 HSPs)
chr4 (383-417)||(25862163-25862197)
chr4 (385-417)||(5269332-5269364)
chr4 (385-417)||(10047303-10047335)
chr4 (385-417)||(54867108-54867140)
[»] chr2 (10 HSPs)
chr2 (383-417)||(8039982-8040016)
chr2 (383-417)||(14699135-14699169)
chr2 (383-417)||(31055964-31055998)
chr2 (383-417)||(33118058-33118092)
chr2 (383-417)||(34682475-34682509)
chr2 (342-371)||(21195641-21195670)
chr2 (385-417)||(8390290-8390322)
chr2 (385-417)||(17865127-17865159)
chr2 (385-417)||(20522144-20522176)
chr2 (385-417)||(23078612-23078644)
[»] scaffold0101 (1 HSPs)
scaffold0101 (346-375)||(43301-43330)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 25795327 - 25795735
Alignment:
Q  1 agaatgtgagagagattgataatgctatgatgagggaggaacaaagaaatttagaagcttttagcttccatttggttactcgctgattaacgaagaaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25795327 agaatgtgagagagattgataatgctatgatgagggaggaacaaagaaatttagaagcttttagcttccatttggttactcgctgatcaacgaagaaaac 25795426  T
Q  101 tcataaacaaaacattaattgcaccagttagtggcagctatgga-ctaagtcaaaacctagtactcctaagccattcaaatgaagtgaatttactggaac 199  Q
    ||| ||||||||||||    |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25795427 tcagaaacaaaacatt----gcaccatttagaggcagctatggaactaagtcaaaacctagtactcctaagccattcaaatgaagtgaatttactggaac 25795522  T
Q  200 attaggggtatagccaattccacttcaagattggctctcaagaggttgattaagttacacaaacctgacattgttttgatacttgaaccctggctagatt 299  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25795523 atcaggggtatagccaattccacttcaagattggctctcaagaggttgattaagttacacaaacctgacattgttttgatacttgaaccctggctagatt 25795622  T
Q  300 ttacaaatttccttctacttattannnnnnnnnnnnnngaataagctaaattagcccatccaaattgacactgaagagaaccaaaatctaagtgtagagc 399  Q
    |||||||||||||||||||| ||               ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25795623 ttacaaatttccttctacttttt----tttttttttttgaataagctaaattagcccatccaaattgacaccgaagagaaccaaaatctaagtgtagagc 25795718  T
Q  400 aacaccacaagtataat 416  Q
    ||||||||||| |||||    
T  25795719 aacaccacaagcataat 25795735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 3328521 - 3328487
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  3328521 aaatctaagtgtagagcaacaccacaagcataatc 3328487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 3716167 - 3716133
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  3716167 aaatctaagtgtagagcaacaccacaagcataatc 3716133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 26298910 - 26298944
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  26298910 aaatctaagtgtagagcaacaccacaagcataatc 26298944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 40592948 - 40592914
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  40592948 aaatctaagtgtagagcaacaccacaagcataatc 40592914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 15072711 - 15072796
Alignment:
Q  191 tactggaacattaggggtatagccaattccacttcaagattggctctcaagaggttgattaagttacacaaacctgacattgtttt 276  Q
    |||||||| || ||||| |||||||||||| | || |||||||||||||| ||||| || ||  | ||||| |||||| |||||||    
T  15072711 tactggaatataaggggaatagccaattccccctctagattggctctcaaaaggttaataaaacttcacaaccctgactttgtttt 15072796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 8370650 - 8370618
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  8370650 atctaagtgtagagcaacaccacaagcataatc 8370618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 27026869 - 27026901
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  27026869 atctaagtgtagagcaacaccacaagcataatc 27026901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 27038214 - 27038246
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  27038214 atctaagtgtagagcaacaccacaagcataatc 27038246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 370
Target Start/End: Original strand, 28531019 - 28531051
Alignment:
Q  338 gaataagctaaattagcccatccaaattgacac 370  Q
    |||||||||||||||||||| ||||||||||||    
T  28531019 gaataagctaaattagcccacccaaattgacac 28531051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 35925406 - 35925438
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  35925406 atctaagtgtagagcaacaccacaagcataatc 35925438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 48438138 - 48438170
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  48438138 atctaagtgtagagcaacaccacaagcataatc 48438170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 2419 - 2356
Alignment:
Q  189 tttactggaacattaggggtatagccaattccacttcaagattggctctcaagaggttgattaa 252  Q
    |||| ||||| || ||||| |||||||||||| | ||||||||||||||||| |||||||||||    
T  2419 tttattggaatataaggggaatagccaattccccctcaagattggctctcaaaaggttgattaa 2356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 47098999 - 47098965
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||||||||||    
T  47098999 aaatctaagtgtagagcaacaccacaagtataatc 47098965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 47103016 - 47102982
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||||||||||    
T  47103016 aaatctaagtgtagagcaacaccacaagtataatc 47102982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 32889360 - 32889392
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataa 415  Q
    |||||||||||||||||||||||||||||||||    
T  32889360 aaatctaagtgtagagcaacaccacaagtataa 32889392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 775594 - 775628
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  775594 aaatctaagtgtagagcaacaccacaagcataatc 775628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 19072849 - 19072883
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  19072849 aaatctaagtgtagagcaacaccacaagcataatc 19072883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 19120739 - 19120773
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  19120739 aaatctaagtgtagagcaacaccacaagcataatc 19120773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 27104547 - 27104513
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  27104547 aaatctaagtgtagagcaacaccacaagcataatc 27104513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 47704111 - 47704077
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    ||||||||||||||||||||||||||||| |||||    
T  47704111 aaatctaagtgtagagcaacaccacaagtttaatc 47704077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 22166171 - 22166118
Alignment:
Q  166 ctaagccattcaaatgaagtgaatttactggaacattaggggtatagccaattc 219  Q
    ||||||| |||||||||||||  ||||||||||| |||||||| |||| |||||    
T  22166171 ctaagcccttcaaatgaagtgcttttactggaaccttaggggtttagctaattc 22166118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 29651735 - 29651767
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  29651735 atctaagtgtagagcaacaccacaagcataatc 29651767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 11492038 - 11492075
Alignment:
Q  342 aagctaaattagcccatccaaattgacactgaagagaa 379  Q
    |||||||||||||||| |||||||||||||||||||||    
T  11492038 aagctaaattagcccacccaaattgacactgaagagaa 11492075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 9766000 - 9765961
Alignment:
Q  378 aaccaaaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  9766000 aacctaaatctaagtgtagagcaacaccacaagcataatc 9765961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 26403405 - 26403371
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  26403405 aaatctaagtgtagagcaacaccacaagcataatc 26403371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 371
Target Start/End: Original strand, 33727838 - 33727867
Alignment:
Q  342 aagctaaattagcccatccaaattgacact 371  Q
    ||||||||||||||||||||||||||||||    
T  33727838 aagctaaattagcccatccaaattgacact 33727867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 5572771 - 5572735
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatcta 419  Q
    |||||||||||||||||||||||||||| ||||||||    
T  5572771 aaatctaagtgtagagcaacaccacaagcataatcta 5572735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 4629875 - 4629909
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  4629875 aaatctaagtgtagagcaacaccacaagcataatc 4629909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 10077340 - 10077306
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  10077340 aaatctaagtgtagagcaacaccacaagcataatc 10077306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 5017641 - 5017609
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  5017641 atctaagtgtagagcaacaccacaagcataatc 5017609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 18232769 - 18232801
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  18232769 atctaagtgtagagcaacaccacaagcataatc 18232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 22963624 - 22963656
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  22963624 atctaagtgtagagcaacaccacaagcataatc 22963656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 23824769 - 23824737
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  23824769 atctaagtgtagagcaacaccacaagcataatc 23824737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 10651 - 10685
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  10651 aaatctaagtgtagagcaacaccacaagcataatc 10685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 4796842 - 4796808
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  4796842 aaatctaagtgtagagcaacaccacaagcataatc 4796808  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 20284011 - 20284045
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  20284011 aaatctaagtgtagagcaacaccacaagcataatc 20284045  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 29159725 - 29159759
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  29159725 aaatctaagtgtagagcaacaccacaagcataatc 29159759  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 19588668 - 19588702
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  19588668 aaatctaagtgtagagcaacaccacaagcataatc 19588702  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 31300771 - 31300737
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    ||||||||||||||||||||||||||||| |||||    
T  31300771 aaatctaagtgtagagcaacaccacaagtgtaatc 31300737  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 28832182 - 28832215
Alignment:
Q  384 aatctaagtgtagagcaacaccacaagtataatc 417  Q
    ||||||||||||||||||||||||||| ||||||    
T  28832182 aatctaagtgtagagcaacaccacaagcataatc 28832215  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 12084349 - 12084317
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  12084349 atctaagtgtagagcaacaccacaagcataatc 12084317  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 370
Target Start/End: Original strand, 32670593 - 32670621
Alignment:
Q  342 aagctaaattagcccatccaaattgacac 370  Q
    |||||||||||||||||||||||||||||    
T  32670593 aagctaaattagcccatccaaattgacac 32670621  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 25862197 - 25862163
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  25862197 aaatctaagtgtagagcaacaccacaagcataatc 25862163  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 5269364 - 5269332
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  5269364 atctaagtgtagagcaacaccacaagcataatc 5269332  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 10047303 - 10047335
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  10047303 atctaagtgtagagcaacaccacaagcataatc 10047335  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 54867108 - 54867140
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  54867108 atctaagtgtagagcaacaccacaagcataatc 54867140  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 8039982 - 8040016
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  8039982 aaatctaagtgtagagcaacaccacaagcataatc 8040016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 14699169 - 14699135
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  14699169 aaatctaagtgtagagcaacaccacaagcataatc 14699135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 31055964 - 31055998
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  31055964 aaatctaagtgtagagcaacaccacaagcataatc 31055998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 33118058 - 33118092
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  33118058 aaatctaagtgtagagcaacaccacaagcataatc 33118092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 34682509 - 34682475
Alignment:
Q  383 aaatctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||||| ||||||    
T  34682509 aaatctaagtgtagagcaacaccacaagcataatc 34682475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 371
Target Start/End: Original strand, 21195641 - 21195670
Alignment:
Q  342 aagctaaattagcccatccaaattgacact 371  Q
    ||||||||||||||||||||||||||||||    
T  21195641 aagctaaattagcccatccaaattgacact 21195670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 8390322 - 8390290
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  8390322 atctaagtgtagagcaacaccacaagcataatc 8390290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 17865127 - 17865159
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  17865127 atctaagtgtagagcaacaccacaagcataatc 17865159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Original strand, 20522144 - 20522176
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  20522144 atctaagtgtagagcaacaccacaagcataatc 20522176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 23078644 - 23078612
Alignment:
Q  385 atctaagtgtagagcaacaccacaagtataatc 417  Q
    |||||||||||||||||||||||||| ||||||    
T  23078644 atctaagtgtagagcaacaccacaagcataatc 23078612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 375
Target Start/End: Original strand, 43301 - 43330
Alignment:
Q  346 taaattagcccatccaaattgacactgaag 375  Q
    ||||||||||||||||||||||||||||||    
T  43301 taaattagcccatccaaattgacactgaag 43330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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