View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2057_high_14 (Length: 417)
Name: NF2057_high_14
Description: NF2057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2057_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 54216049 - 54215641
Alignment:
| Q |
1 |
ttaaagatattaatagagcttcaaaatgtcttcaaaatagacataagtttgagttggttgtgatgattgcttacaaaatagaaagtaacaggtgtttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54216049 |
ttaaagatattaatagagcttcaaaatgtcttcaaaatagacataagtttgagttggttgtgatgattgcttacaaaatagaaagtaacaggtgtttttg |
54215950 |
T |
|
| Q |
101 |
tccagaaactgttgtgatccctcacaaaggatgtctcatgagtaagcctgaatcttctaggatctgaaaattattacacacccatttcagaattgaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54215949 |
tccagaaactgttgtgatccctcacaaaggatgtctcatgagtaagcctgaatcttctaggatctgaaaattattacacacccatttcagaattgaatat |
54215850 |
T |
|
| Q |
201 |
gttatnnnnnnntttgtaacttgatgatggaaacacattatttatatgtcattgccgtaccattcaaggcatcttcatcgaccaaatggtcttgctccca |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54215849 |
gttataaaaaaagttgtaacttgatgatggaaacacattatttatatgtcattgccgtaccattcaaggcatcttcatcgaccaaatggtcttgctccca |
54215750 |
T |
|
| Q |
301 |
ttctttccaacctttaatctgccataacaaataaaaggctcttatcttatagaatgacaaaataaacaaccaagatgtttatgcccctaaatcaacacaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54215749 |
ttctttccaacctttaatctgccataacaaataaaaggctcttatcttatagaatgacaaaataaacaaccaagatgtttatgcccctaaatcaacacaa |
54215650 |
T |
|
| Q |
401 |
acctttgct |
409 |
Q |
| |
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||||||||| |
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| T |
54215649 |
acctttgct |
54215641 |
T |
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